Sample: 4445798.3


Sample Name 4445798.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445798.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445798.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica pool01  
Sample name 4445798.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 54,318 11,876,088 219 51.62  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.350.genecalling.faa
Preprocess.passed.fna 50,176 11,606,712 231 51.61  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.100.preprocess.passed.fna
Preprocess.removed.fna 4,142 269,271 65 51.76  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.100.preprocess.removed.fna
Dereplication.passed.fna 30,463 7,103,667 233 51.74  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.150.dereplication.passed.fna
Dereplication.removed.fna 19,712 4,503,009 228 51.42  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.150.dereplication.removed.fna
Screen.passed.fna 30,462 7,103,738 233 51.74  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.299.screen.passed.fna
Rna.filter.fna 43,491 10,097,305 232 52.66  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.425.rna.filter.fna
Cluster.rna97.fna 11,607 2,666,128 230 52.66  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3505/mgm4445798.3.700.annotation.sims.filter.seq


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