Sample: 4445811.3


Sample Name 4445811.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445811.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445811.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica, pool03  
Sample name 4445811.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 72,077 15,725,760 218 50.55  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.350.genecalling.faa
Preprocess.passed.fna 66,180 15,376,261 232 50.58  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.100.preprocess.passed.fna
Preprocess.removed.fna 5,897 348,984 59 49.52  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.100.preprocess.removed.fna
Dereplication.passed.fna 42,242 9,827,601 233 50.66  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.150.dereplication.passed.fna
Dereplication.removed.fna 23,937 5,548,597 232 50.44  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.150.dereplication.removed.fna
Screen.passed.fna 42,238 9,827,093 233 50.66  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.299.screen.passed.fna
Rna.filter.fna 50,998 11,928,942 234 52.54  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.425.rna.filter.fna
Cluster.rna97.fna 1 102 102 46.08  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3504/mgm4445811.3.700.annotation.sims.filter.seq


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