Sample: 4445815.3


Sample Name 4445815.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445815.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445815.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica, pool11  
Sample name 4445815.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 67,823 15,656,261 231 51.02  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.350.genecalling.faa
Preprocess.passed.fna 64,456 15,313,456 238 51  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.100.preprocess.passed.fna
Preprocess.removed.fna 3,367 342,660 102 51.58  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.100.preprocess.removed.fna
Dereplication.passed.fna 46,591 11,093,783 238 51.36  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.150.dereplication.passed.fna
Dereplication.removed.fna 17,864 4,219,477 236 50.07  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.150.dereplication.removed.fna
Screen.passed.fna 46,583 11,091,878 238 51.36  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.299.screen.passed.fna
Rna.filter.fna 51,548 12,307,085 239 52.55  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.425.rna.filter.fna
Cluster.rna97.fna 1 154 154 43.51  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3503/mgm4445815.3.700.annotation.sims.filter.seq


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