Sample: 4445807.3


Sample Name 4445807.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445807.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445807.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica, pool16  
Sample name 4445807.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 125,032 25,411,504 203 51.6  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.350.genecalling.faa
Preprocess.passed.fna 115,590 24,937,387 216 51.57  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.100.preprocess.passed.fna
Preprocess.removed.fna 9,442 473,611 50 53.45  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.100.preprocess.removed.fna
Dereplication.passed.fna 78,250 17,080,410 218 51.82  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.150.dereplication.passed.fna
Dereplication.removed.fna 37,339 7,857,619 210 51.01  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.150.dereplication.removed.fna
Screen.passed.fna 78,237 17,077,572 218 51.82  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.299.screen.passed.fna
Rna.filter.fna 94,823 20,559,523 217 52.74  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.425.rna.filter.fna
Cluster.rna97.fna 1 81 81 59.26  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3502/mgm4445807.3.700.annotation.sims.filter.seq


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