Sample: 4445806.3


Sample Name 4445806.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445806.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445806.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica, pool15  
Sample name 4445806.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 119,432 26,611,838 223 51.58  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.350.genecalling.faa
Preprocess.passed.fna 111,986 26,250,638 234 51.56  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.100.preprocess.passed.fna
Preprocess.removed.fna 7,446 361,876 49 53.25  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.100.preprocess.removed.fna
Dereplication.passed.fna 80,706 19,133,778 237 51.77  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.150.dereplication.passed.fna
Dereplication.removed.fna 31,279 7,116,598 228 50.99  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.150.dereplication.removed.fna
Screen.passed.fna 80,705 19,133,541 237 51.77  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.299.screen.passed.fna
Rna.filter.fna 87,836 20,610,717 235 52.92  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.425.rna.filter.fna
Cluster.rna97.fna 1 73 73 47.95  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3501/mgm4445806.3.700.annotation.sims.filter.seq


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