Sample: 4445804.3


Sample Name 4445804.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445804.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445804.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica, pool06  
Sample name 4445804.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 57,121 13,633,640 239 50.95  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.350.genecalling.faa
Preprocess.passed.fna 53,226 13,464,581 253 50.94  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.100.preprocess.passed.fna
Preprocess.removed.fna 3,895 168,809 43 52.21  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.100.preprocess.removed.fna
Dereplication.passed.fna 38,627 9,732,459 252 51.02  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.150.dereplication.passed.fna
Dereplication.removed.fna 14,598 3,731,979 256 50.74  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.150.dereplication.removed.fna
Screen.passed.fna 38,621 9,731,333 252 51.02  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.299.screen.passed.fna
Rna.filter.fna 39,984 10,039,583 251 52.61  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.425.rna.filter.fna
Cluster.rna97.fna 1 63 63 52.38  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3500/mgm4445804.3.700.annotation.sims.filter.seq


N/A