Sample: 4445803.3


Sample Name 4445803.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445803.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445803.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica, pool04  
Sample name 4445803.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 68,535 14,464,312 211 51.3  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.350.genecalling.faa
Preprocess.passed.fna 62,970 14,156,915 225 51.3  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.100.preprocess.passed.fna
Preprocess.removed.fna 5,565 307,633 55 51.28  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.100.preprocess.removed.fna
Dereplication.passed.fna 43,616 9,822,759 225 50.65  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.150.dereplication.passed.fna
Dereplication.removed.fna 19,353 4,334,104 224 52.78  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.150.dereplication.removed.fna
Screen.passed.fna 43,614 9,822,309 225 50.65  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.299.screen.passed.fna
Rna.filter.fna 41,592 9,423,499 227 52.16  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.425.rna.filter.fna
Cluster.rna97.fna 1 89 89 55.06  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3499/mgm4445803.3.700.annotation.sims.filter.seq


N/A