Sample: 4445799.3


Sample Name 4445799.3 
Sample Type
Project Biodiversity of viruses in wild plants
Investigators (0) N/A
URL N/A
Description
Sample Accession cobian22_4445799.3
Assembly  

Latitude 10.8500  
Longitude -85.6167  
Country Costa Rica  

Mgrast metagenome id 4445799.3  

Sequencing method 454  
Sample prep method dsRNA enrichment + random amplification +RT  
Original nucleic acids type dsRNA  

Sample description Plant Virus Ecogenomics Area Conservacion Guanacaste, Costa Rica pool02  
Sample name 4445799.3  

Type #Seqs #BP Avg. Len. %GC Location
Reads 75,329 16,198,748 215 51.33  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.050.upload.fna
CDS  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.350.genecalling.faa
Preprocess.passed.fna 68,811 15,828,594 230 51.31  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.100.preprocess.passed.fna
Preprocess.removed.fna 6,518 370,483 57 52.28  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.100.preprocess.removed.fna
Dereplication.passed.fna 34,581 8,014,493 232 51.32  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.150.dereplication.passed.fna
Dereplication.removed.fna 34,229 7,813,796 228 51.29  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.150.dereplication.removed.fna
Screen.passed.fna 34,578 8,013,797 232 51.32  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.299.screen.passed.fna
Rna.filter.fna 55,469 12,861,597 232 52.37  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.425.rna.filter.fna
Cluster.rna97.fna 11,750 2,645,630 225 52.27  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.440.cluster.rna97.fna
Cluster.rna97.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.440.cluster.rna97.mapping
Rna.sims  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.450.rna.sims
Cluster.aa90.faa  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.550.cluster.aa90.faa
Cluster.aa90.mapping  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.550.cluster.aa90.mapping
Protein.sims  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.650.protein.sims
Annotation.sims.filter.seq  /iplant/home/shared/imicrobe/projects/149/samples/3498/mgm4445799.3.700.annotation.sims.filter.seq


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