Sample: MMETSP0494


Sample Name MMETSP0494 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thalassiosira gravida GMp14c1

Sample Accession CAM_SMPL_003121
Assembly  
Combined Assembly Thalassiosira-gravida-GMp14c1
Taxon ID 420259

Ph 8.3  
Phosphate 0.4  
Nitrate 882  
Silicate 106  
Ammonium 100  
Axenic No  
Trace elements 24.5  
Experimental salinity 35  

Longhurst province NWCS  

Growth medium F/2 amended seawater  
Modifications to growth medium f/2 for all nutrients except phosphorate, which was added at 0.4 uM  

NCBI SRA SRS619103  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description Coastal waters  

Site name Atlantic_Ocean  
Latitude 41.92732  
Longitude -67.85788  
Site description Gulf of Maine  
Country UNITED STATES  
Country US  
Depth 10  
Sample collection site Atlantic_Ocean  
Other collection site info Gulf of Maine  

Project id 104  
Collection start time 2011-04-10 00:00:00.0  
Collection stop time 2011-04-10 00:00:00.0  
Clonal 1  
Collection date 10-APR-11  
Date of experiment 20-OCT-12  
External sample id GMp14c1-Plim  
Investigation type EU  
Principle investigator Tatiana Rynearson  

GenBank BioSample 2740366  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP049/MMETSP0494.fastq.tar  

Day portion of day night cycle in hours 12  
Light 178  
Experimental temperature 14  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001867  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000839  
Combined assembly name Thalassiosira-gravida-GMp14c1  
Pcr amp No  

Source mat id (MMETSP0494) Thalassiosira gravida - Seawater  
Source mat id 3552  
Source mat id CAM_BM_003141  
Source mat id CAM_SMPL_003121  
Sample type eukaryotes  
Sample description Thalassiosira gravida GMp14c1  
Sample name MMETSP0494  
Taxon id 420259  
Sample material Seawater  

Strain GMp14c1  
Genus Thalassiosira  
Species gravida  
Family Skeletonemaceae  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A