Sample: MMETSP0912


Sample Name MMETSP0912 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thalassiosira rotula GSO102

Sample Accession CAM_SMPL_003108
Assembly  
Combined Assembly Thalassiosira-rotula-GSO102
Taxon ID 49265

Ph 8.3  
Phosphate 0.4  
Nitrate 882  
Silicate 106  
Ammonium 100  
Iron 4  
Axenic 1  
Experimental salinity 35  

Growth medium F/2 amended seawater  
Modifications to growth medium F/2: 4nM Fe, 12.5um EDTA, 0.4uM Phosphate  

NCBI SRA SRS619107  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description Coastal waters  

Site name Pacific_Ocean  
Latitude 48.629353  
Longitude -122.957542  
Country UNITED STATES  
Country US  
Depth 0.5  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2011-08-20 00:00:00.0  
Collection stop time 2011-08-20 00:00:00.0  
Clonal 1  
Collection date 20-AUG-11  
Date of experiment 01-OCT-12  
External sample id GSO102-Fe lim  
Investigation type EU  
Principle investigator Tatiana Rynearson  
Primary citation Meunier A: Microplancton des Mers de Berents et de Kara. Duc d'Orleans, Champagne Artique de 1907 1910(Atlas of pls I-XXXVII):1-355  
Other experimental metadata available 12.5um EDTA  

GenBank BioSample 2740371  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP091/MMETSP0912.fastq.tar  

Day portion of day night cycle in hours 24  
Light 112  
Experimental temperature 20  

Library acc CAM_LIB_001854  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000826  
Combined assembly name Thalassiosira-rotula-GSO102  
Pcr amp No  

Source mat id (MMETSP0912) Thalassiosira rotula - Seawater  
Source mat id 3539  
Source mat id CAM_BM_003128  
Source mat id CAM_SMPL_003108  
Sample type eukaryotes  
Sample description Thalassiosira rotula GSO102  
Sample name MMETSP0912  
Taxon id 49265  
Sample material Seawater  

Strain GSO102  
Genus Thalassiosira  
Species rotula  
Family Skeletonemaceae  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A