Sample: MMETSP1346


Sample Name MMETSP1346 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Aplanochytrium stocchinoi GSBS06

Sample Accession CAM_SMPL_002953
Assembly  
Combined Assembly Aplanochytrium-stocchinoi-GSBS06
Taxon ID 215587

Ph 8  
Axenic 1  
Experimental salinity 25  
Environmental salinity 25  

Longhurst province NWCS  

Growth medium ATCC medium 790BY+ (0.8% agar plates)  
Modifications to growth medium glucose, peptone, yeast extract at half concentration; 25g Instant Ocean per liter instead of filtered seawater; solidified with 0.8% agar  
Other environmental metadata available none available  

NCBI SRA SRS616881  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  
Habitat description Sediment from Great South Bay, Long Island, NY, USA  

Site name OTHER  
Latitude 40.7  
Longitude -73.1  
Site description Great South Bay, Long Island, NY  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site OTHER  
Other collection site info Great South Bay, Long Island, NY  

Project id 104  
Collection start time 2008-07-10 00:00:00.0  
Collection stop time 2008-07-10 00:00:00.0  
Clonal 1  
Collection date 10-JUL-08  
Date of experiment 11-JUN-12  
External sample id Aplano. GSBS06 790By+  
Investigation type EU  
Principle investigator Jackie Collier  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Damare, V. & Raghukumar, S. 2010. Association of the  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Damare, V. & Raghukumar, S. 2010. Association of the s  
Primary citation Moro I, Negrisolo E, Callegaro A, Andreoli C. 2003. Aplanochytrium stocchinoi: a new Labyrinthulomycota from the southern ocean (Ross Sea, Antarctica). Protist 154(3-4):331-40.  
Other experimental metadata available Harvested 575 mg (wet weight) biomass from 10 plates after 5 days of growth  

GenBank BioSample 2740278  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP134/MMETSP1346.fastq.tar  

Pressure 1  
Experimental temperature 23  

Library acc CAM_LIB_001719  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000771  
Combined assembly name Aplanochytrium-stocchinoi-GSBS06  
Pcr amp No  

Source mat id (MMETSP1346) Aplanochytrium stocchinoi - Sediment  
Source mat id 3428  
Source mat id CAM_BM_002973  
Source mat id CAM_SMPL_002953  
Sample type eukaryotes  
Sample description Aplanochytrium stocchinoi GSBS06  
Sample name MMETSP1346  
Taxon id 215587  
Sample material Sediment  

Strain GSBS06  
Genus Aplanochytrium  
Species stocchinoi  
Family Thraustochytriaceae  
Order Labyrinthulomycetes  
Superkingdom Eukaryota  
Class Labyrinthulea  
Phylum Labyrinthista  

N/A