Sample: MMETSP0604


Sample Name MMETSP0604 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Skeletonema menzelii CCMP793

Sample Accession CAM_SMPL_002865
Assembly  
Combined Assembly Skeletonema-menzelii-CCMP793
Taxon ID 216823

Ph 7.9  
Phosphate 36.2  
Nitrate 10  
Silicate 106  
Axenic No  
Experimental salinity 36  

Growth medium f/2 amended seawater  
Modifications to growth medium f/2 for all nutrients except nitrate  

NCBI SRA SRS618917  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Coastal salt pong  

Site name Atlantic_Ocean  
Latitude 41.566  
Longitude -70.5842  
Site description Perch Pond, Falmouth, Massachusetts USA  
Country UNITED STATES  
Country US  
Sample collection site Atlantic_Ocean  
Other collection site info Perch Pond, Falmouth, Massachusetts USA  

Project id 104  
Collection start time 1982-07-18 00:00:00.0  
Collection stop time 1982-07-18 00:00:00.0  
Clonal 1  
Collection date 18-JUL-82  
Date of experiment 26-SEP-11  
External sample id CCMP793-N-limit  
Investigation type EU  
Principle investigator Tatiana Rynearson  
Additional citations Kooistra, W. H. C. F., D. Sarno, S. Balzano, H. Gu, R. A. Andersen and A. Zingone (2008). "Global Diversity and Biogeography of Skeletonema Species (Bacillariophyta)." Protist 159(2): 177-193.  
Other experimental metadata available Axenic  

GenBank BioSample 2740056  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP060/MMETSP0604.fastq.tar  

Day portion of day night cycle in hours 12  
Light 180  
Experimental temperature 14  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001631  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000683  
Combined assembly name Skeletonema-menzelii-CCMP793  
Pcr amp No  

Source mat id (MMETSP0604) Skeletonema menzelii - seawater  
Source mat id CAM_BM_002885  
Source mat id CAM_SMPL_002865  
Sample type eukaryotes  
Sample description Skeletonema menzelii CCMP793  
Sample name MMETSP0604  
Taxon id 216823  
Sample material seawater  

Strain CCMP793  
Genus Skeletonema  
Species menzelii  
Family Skeletonemaceae  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A