Sample: MMETSP0718


Sample Name MMETSP0718 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Chaetoceros curvisetus

Sample Accession CAM_SMPL_002856
Assembly  
Combined Assembly Chaetoceros-curvisetus
Taxon ID 230516

Ph 8  
Phosphate 0.2  
Silicate .42  
Axenic No  
Trace elements 19.73  
Experimental salinity 29  

Growth medium ASW  
Modifications to growth medium Cells grown exponentially in ASW were harvested by centrifugation and re-suspended in ASW with no NO3-  
Other environmental metadata available SIO Pier is a SCCOOS monitoring site  

NCBI SRA SRS619109  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description mesotrophic coastal ocean  

Site name Pacific_Ocean  
Latitude 32.9  
Longitude -117.255  
Longitude 117.255  
Site description SIO Pier  
Country UNITED STATES  
Country US  
Sample collection site Pacific_Ocean  
Other collection site info SIO Pier  

Project id 104  
Clonal 1  
Date of experiment 19-AUG-11  
External sample id C.curvisetus_Exponential  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available cell concentration, neutral lipid content (fluorometrically determined with Nile Red)  

GenBank BioSample 2740490  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP071/MMETSP0718.fastq.tar  

Day portion of day night cycle in hours 24  
Light 200  
Experimental temperature 20  

Library acc CAM_LIB_001622  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000674  
Combined assembly name Chaetoceros-curvisetus  
Pcr amp No  

Source mat id (MMETSP0718) Chaetoceros curvisetus - seawater  
Source mat id 3331  
Source mat id CAM_BM_002876  
Source mat id CAM_SMPL_002856  
Sample type eukaryotes  
Sample description Chaetoceros curvisetus  
Sample name MMETSP0718  
Taxon id 230516  
Sample material seawater  

Strain Chaetoceros curvisetus  
Genus Chaetoceros  
Species curvisetus  
Family Chaetocerotaceae  
Order Chaetocerotales  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A