Sample: MMETSP0884


Sample Name MMETSP0884 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pelagococcus subviridis CCMP1429

Sample Accession CAM_SMPL_002851
Assembly  
Combined Assembly Pelagococcus-subviridis-CCMP1429
Taxon ID 35679

Prey organism if applicable none  

Ph 7.8  
Dissolved oxygen 8  
Phosphate 0.2  
Ammonium 80  
Iron 1100  
Axenic No  
Trace elements 1004  
Experimental salinity 32  
Environmental salinity 32.6  
Carbon dioxide 400  

Longhurst province PSAE  

Growth medium GSe media  
Modifications to growth medium Ammonium in place of nitrate  
Other environmental metadata available Representative data from the location of collection is available  

NCBI SRA SRS619062  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description open ocean mixed layer  

Site name Pacific_Ocean  
Latitude 49.9166  
Longitude -145.1166  
Site description Collected along the Great Circle Route traveled by American Mail Line ships from Yokohama to Seattle.  
Country UNITED STATES  
Country US  
Sample collection site Pacific_Ocean  
Other collection site info Collected along the Great Circle Route traveled by American Mail Line ships from Yokohama to Seattle.  

Project id 104  
Collection start time 2072-05-01 12:00:00.0  
Collection stop time 2072-05-01 12:00:00.0  
Clonal Unknown  
Collection date 01-MAY-72  
Date of experiment 25-SEP-11  
External sample id Pelagococcus P-limited  
Investigation type EU  
Principle investigator Christopher Gobler  
Primary citation AN ABERRANT CHRYSOPHYCEAN ALGA PELAGOCOCCUS SUBVIRIDIS GEN. NOV. ... FROM THE NORTH PACIFIC OCEAN. Journal of Phycology, 13: 259–266  
Collection time 12:00 PM  

GenBank BioSample 2740023  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP088/MMETSP0884.fastq.tar  

Pressure 1  
Day portion of day night cycle in hours 12  
Light 80  
Experimental temperature 15  
Night portion of day night cycle in hours 12  
Environmental temperature 6  

Library acc CAM_LIB_001617  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000669  
Combined assembly name Pelagococcus-subviridis-CCMP1429  
Pcr amp No  

Source mat id (MMETSP0884) Pelagococcus subviridis - seawater  
Source mat id 3326  
Source mat id CAM_BM_002871  
Source mat id CAM_SMPL_002851  
Sample type eukaryotes  
Sample description Pelagococcus subviridis CCMP1429  
Sample name MMETSP0884  
Taxon id 35679  
Sample material seawater  

Strain CCMP1429  
Genus Pelagococcus  
Species subviridis  
Family Pelagomonodaceae  
Superkingdom Eukaryota  
Class Pelagophyceae  
Phylum Ochrophyta  

N/A