Sample: MMETSP0807


Sample Name MMETSP0807 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Picocystis salinarum CCMP1897

Sample Accession CAM_SMPL_002839
Assembly  
Combined Assembly Picocystis-salinarum-CCMP1897
Taxon ID 88271

Ph 8.2  
Phosphate 10  
Nitrate 882  
Ammonium 50  
Axenic No  
Trace elements 12766  
Experimental salinity 35  

Longhurst province CCAL  

Growth medium K-Si amended natural seawater (Eastern Pacific)  
Modifications to growth medium K for all nutrients except omitted silicate  

NCBI SRA SRS616867  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description saline pond  

Site name Pacific_Ocean  
Latitude 37.78  
Longitude -122.35  
Site description San Francisco Bay  
Country UNITED STATES  
Country US  
Sample collection site Pacific_Ocean  
Other collection site info San Francisco Bay  

Project id 104  
Collection start time 1999-12-05 00:00:00.0  
Collection stop time 1999-12-05 00:00:00.0  
Clonal Unknown  
Collection date 05-DEC-99  
Date of experiment 15-DEC-10  
External sample id CCMP1897  
Investigation type EU  
Principle investigator Alexandra Z. Worden  

GenBank BioSample 2740184  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP080/MMETSP0807.fastq.tar  

Day portion of day night cycle in hours 14  
Light 30  
Experimental temperature 6  
Night portion of day night cycle in hours 10  

Library acc CAM_LIB_001605  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000657  
Combined assembly name Picocystis-salinarum-CCMP1897  
Pcr amp No  

Source mat id (MMETSP0807) Picocystis salinarum - saline pond  
Source mat id CAM_BM_002859  
Source mat id CAM_SMPL_002839  
Sample type eukaryotes  
Sample description Picocystis salinarum CCMP1897  
Sample name MMETSP0807  
Taxon id 88271  
Sample material saline pond  

Strain CCMP1897  
Genus Picocystis  
Species salinarum  
Family Unknown  
Superkingdom Eukaryota  
Class Unknown  
Phylum Chlorophyta  

N/A