Sample: MMETSP0708


Sample Name MMETSP0708 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Asterionellopsis glacialis CCMP134

Sample Accession CAM_SMPL_002838
Assembly  
Combined Assembly Asterionellopsis-glacialis-CCMP134
Taxon ID 33640

Ph 8  
Phosphate 0.01  
Nitrate 0.55  
Silicate .11  
Axenic No  
Trace elements 16.33  

Growth medium NEPC  
Modifications to growth medium Cells grown exponentially in NEPC were harvested by centrifugation and re-suspended in fresh NEPC with 2.5mg L-1 nocodazole  

NCBI SRA SRS618925  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Pacific_Ocean  
Latitude 32.655  
Longitude -117.14  
Longitude 117.14  
Site description San Diego Bay  
Country UNITED STATES  
Country US  
Sample collection site Pacific_Ocean  
Other collection site info San Diego Bay  

Project id 104  
Collection start time 1963-05-01 00:00:00.0  
Collection stop time 1963-05-01 00:00:00.0  
Clonal 1  
Collection date 01-MAY-63  
Date of experiment 24-AUG-11  
External sample id A.glacialis_Nocodazole  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available cell concentration, neutral lipid content (fluorometrically determined with Nile Red)  

GenBank BioSample 2739981  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP070/MMETSP0708.fastq.tar  

Day portion of day night cycle in hours 24  
Light 200  
Experimental temperature 20  

Library acc CAM_LIB_001604  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000656  
Combined assembly name Asterionellopsis-glacialis-CCMP134  
Pcr amp No  

Source mat id (MMETSP0708) Asterionellopsis glacialis  
Source mat id 3313  
Source mat id CAM_BM_002858  
Source mat id CAM_SMPL_002838  
Sample type eukaryotes  
Sample description Asterionellopsis glacialis CCMP134  
Sample name MMETSP0708  
Taxon id 33640  

Strain CCMP134  
Genus Asterionellopsis  
Species glacialis  
Family Fragilariaceae  
Order Fragilariales  
Superkingdom Eukaryota  
Class Fragilariophyceae  
Phylum Bacillariophyta  

N/A