Sample: MMETSP0853


Sample Name MMETSP0853 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pseudo-nitzschia fraudulenta WWA7

Sample Accession CAM_SMPL_002822
Assembly  
Combined Assembly Pseudo_nitzschia-fradulenta-WWA7
Taxon ID 183588

Ph 7.9  
Phosphate 32  
Nitrate 643  
Silicate 10.6  
Axenic No  
Experimental salinity 35  
Environmental salinity 35  
Carbon dioxide 750  

Longhurst province CCAL  

Growth medium f/2 enriched seawater  
Modifications to growth medium f/2 for all nutirents except the final concentration of sodium metasilicate was 10.6 uM  
Other environmental metadata available no other types of environmental metadata available  

NCBI SRA SRS618863  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  
Habitat description small cove with cobblestone/sand bottom  

Site name Pacific_Ocean  
Latitude 34.0847  
Longitude -119.05  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2010-03-27 06:30:00.0  
Collection stop time 2010-03-27 06:30:00.0  
Clonal 1  
Collection date 27-MAR-10  
Date of experiment 10-AUG-10  
External sample id Si-limited 750 ppm  
Investigation type EU  
Principle investigator Bethany Jenkins  
Collection time 06:30 AM  

GenBank BioSample 2740327  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP085/MMETSP0853.fastq.tar  

Day portion of day night cycle in hours 12  
Light 90  
Experimental temperature 16  
Night portion of day night cycle in hours 12  
Environmental temperature 14  

Library acc CAM_LIB_001588  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000640  
Combined assembly name Pseudo_nitzschia-fradulenta-WWA7  
Pcr amp No  

Source mat id (MMETSP0853) Pseudo-nitzschia fraudulenta - seawater  
Source mat id 3297  
Source mat id CAM_BM_002842  
Source mat id CAM_SMPL_002822  
Sample type eukaryotes  
Sample description Pseudo-nitzschia fraudulenta WWA7  
Sample name MMETSP0853  
Taxon id 183588  
Sample material seawater  

Strain WWA7  
Genus Pseudo-nitzschia  
Species fraudulenta  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta  

N/A