Sample: MMETSP0852


Sample Name MMETSP0852 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pseudo-nitzschia fraudulenta WWA7

Sample Accession CAM_SMPL_002814
Assembly  
Combined Assembly Pseudo_nitzschia-fradulenta-WWA7
Taxon ID 183588

Ph 8  
Phosphate 32  
Nitrate 643  
Silicate 106.1  
Axenic No  
Experimental salinity 35  
Environmental salinity 35  
Carbon dioxide 750  

Longhurst province CCAL  

Growth medium f/2 enriched seawater  
Other environmental metadata available no other types of environmental metadata available  

NCBI SRA SRS616849  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  
Habitat description small cove with cobblestone/sand bottom  

Site name Pacific_Ocean  
Latitude 34.0847  
Longitude -119.05  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2010-03-27 06:30:00.0  
Collection stop time 2010-03-27 06:30:00.0  
Clonal 1  
Collection date 27-MAR-10  
Date of experiment 09-AUG-06  
External sample id Si-replete 750 ppm  
Investigation type EU  
Principle investigator Bethany Jenkins  
Collection time 06:30 AM  

GenBank BioSample 2740326  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP085/MMETSP0852.fastq.tar  

Day portion of day night cycle in hours 12  
Light 90  
Experimental temperature 16  
Night portion of day night cycle in hours 12  
Environmental temperature 14  

Library acc CAM_LIB_001580  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000632  
Combined assembly name Pseudo_nitzschia-fradulenta-WWA7  
Pcr amp No  

Source mat id (MMETSP0852) Pseudo-nitzschia fraudulenta - seawater  
Source mat id 3289  
Source mat id CAM_BM_002834  
Source mat id CAM_SMPL_002814  
Sample type eukaryotes  
Sample description Pseudo-nitzschia fraudulenta WWA7  
Sample name MMETSP0852  
Taxon id 183588  
Sample material seawater  

Strain WWA7  
Genus Pseudo-nitzschia  
Species fraudulenta  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta  

N/A