Sample: MMETSP0942


Sample Name MMETSP0942 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Cafeteria roenbergensis E4-10

Sample Accession CAM_SMPL_002772
Assembly  
Taxon ID 33653

Prey organism if applicable Enterobacter aerogenes  

Ph 8.4  
Axenic No  
Experimental salinity 32  

Longhurst province CCAL  

Growth medium artificial seawater: NaCl (24.72 g/L), KCl (6.7 g/L), CaCl2 (1.03 g/L), MgCl2 (2.18 g/L), MgSO4 (3.07 g/L), NaHCO3 (0.18 g/L)  

NCBI SRA SRS621309  

Habitat name marine habitat  
Envo term for habitat primary term Aquatic: marine  
Habitat marine habitat  
Habitat description Coastal (5km from shore); photic zone  

Site name Pacific_Ocean  
Latitude 44.7  
Longitude -124.2  
Site description station NH5  
Country UNITED STATES  
Country US  
Depth 60  
Sample collection site Pacific_Ocean  
Other collection site info station NH5  

Project id 104  
Collection start time 1990-04-01 00:00:00.0  
Collection stop time 1990-04-01 00:00:00.0  
Clonal 1  
Collection date 01-APR-90  
Date of experiment 31-MAY-11  
External sample id CafeteriaE4-10  
Investigation type EU  
Principle investigator Alastair Simpson  
Additional citations PMID: 20974979  
Primary citation Gonzalez JM & Suttle CA (1993) Grazing by marine nanoflagellates on viruses and virus-sized particles: Ingestion and digestion. Mar Ecol Prog Ser 94:1–10.  

GenBank BioSample 2740089  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP094/MMETSP0942.fastq.tar  

Experimental temperature 22  

Library acc CAM_LIB_001538  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000590  
Pcr amp No  

Source mat id (MMETSP0942) Cafeteria roenbergensis - seawater  
Source mat id 3247  
Source mat id CAM_BM_002792  
Source mat id CAM_SMPL_002772  
Sample type eukaryotes  
Sample description Cafeteria roenbergensis E4-10  
Sample name MMETSP0942  
Taxon id 33653  
Sample material seawater  

Strain E4-10  
Genus Cafeteria  
Species roenbergensis  
Family Cafeteriaceae  
Order Bicosoecida  
Superkingdom Eukaryota  
Class Bicosoecophyceae  
Phylum Bicosoecida