Sample: MMETSP0754


Sample Name MMETSP0754 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Chaetoceros neogracile CCMP1317

Sample Accession CAM_SMPL_002770
Assembly  
Combined Assembly Chaetoceros-neogracile-CCMP1317
Taxon ID 240364

Ph 8  
Phosphate 0.01  
Nitrate 0.55  
Silicate .11  
Axenic No  
Trace elements 16.33  
Experimental salinity 30  

Growth medium NEPC  
Modifications to growth medium NEPC for all nutrients + 2.5mg L-1 of the microtubule inhibitor nocodazole  

NCBI SRA SRS618952  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Project id 104  
Clonal 1  
Date of experiment 01-DEC-11  
External sample id C.neogracile_Nocodazole  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available growth, neutral lipid content (fluorometrically determined with Nile Red or Bodipy)  

GenBank BioSample 2740511  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP075/MMETSP0754.fastq.tar  

Day portion of day night cycle in hours 24  
Light 200  
Experimental temperature 20  

Library acc CAM_LIB_001536  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000588  
Combined assembly name Chaetoceros-neogracile-CCMP1317  
Pcr amp No  

Source mat id (MMETSP0754) Chaetoceros neogracile  
Source mat id CAM_BM_002790  
Source mat id CAM_SMPL_002770  
Sample type eukaryotes  
Sample description Chaetoceros neogracile CCMP1317  
Sample name MMETSP0754  
Taxon id 240364  

Strain CCMP1317  
Genus Chaetoceros  
Species neogracile  
Family Chaetocerotaceae  
Order Chaetocerotales  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A