Sample: MMETSP0747


Sample Name MMETSP0747 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Nitzschia punctata CCMP561

Sample Accession CAM_SMPL_002750
Assembly  
Combined Assembly Nitzschia-punctata-CCMP561
Taxon ID 913974

Ph 8  
Phosphate 0.2  
Nitrate 2.97  
Silicate .42  
Axenic No  
Trace elements 19.73  
Experimental salinity 30  

Growth medium ASW  
Modifications to growth medium ASW for all nutrients + 2.5mg L-1 of the microtubule inhibitor nocodazole  

NCBI SRA SRS618948  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Project id 104  
Clonal 1  
Date of experiment 01-DEC-11  
External sample id N.punctata_Nocodazole  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available growth, neutral lipid content (fluorometrically determined with Nile Red or Bodipy)  

GenBank BioSample 2740507  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP074/MMETSP0747.fastq.tar  

Day portion of day night cycle in hours 24  
Light 200  
Experimental temperature 20  

Library acc CAM_LIB_001516  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000568  
Combined assembly name Nitzschia-punctata-CCMP561  
Pcr amp No  

Source mat id (MMETSP0747) Nitzschia punctata  
Source mat id 3225  
Source mat id CAM_BM_002770  
Source mat id CAM_SMPL_002750  
Sample type eukaryotes  
Sample description Nitzschia punctata CCMP561  
Sample name MMETSP0747  
Taxon id 913974  

Strain CCMP561  
Genus Nitzschia  
Species punctata  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta