Sample: MMETSP0746


Sample Name MMETSP0746 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Nitzschia punctata CCMP561

Sample Accession CAM_SMPL_002749
Assembly  
Combined Assembly Nitzschia-punctata-CCMP561
Taxon ID 913974

Ph 8  
Phosphate 0.2  
Silicate .42  
Axenic No  
Trace elements 19.73  
Experimental salinity 30  

Growth medium ASW  
Modifications to growth medium ASW for all nutrients except nitrate, which was not added  
Other environmental metadata available growth, neutral lipid content (fluorometrically determined with Nile Red or Bodipy)  

NCBI SRA SRS618947  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Project id 104  
Clonal 1  
Date of experiment 01-DEC-11  
External sample id N.punctata_N-limited  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available cell concentration, neutral lipid content (fluorometrically determined with Nile Red)  

GenBank BioSample 2740506  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP074/MMETSP0746.fastq.tar  

Day portion of day night cycle in hours 24  
Light 200  
Experimental temperature 20  

Library acc CAM_LIB_001515  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000567  
Combined assembly name Nitzschia-punctata-CCMP561  
Pcr amp No  

Source mat id (MMETSP0746) Nitzschia punctata  
Source mat id 3224  
Source mat id CAM_BM_002769  
Source mat id CAM_SMPL_002749  
Sample type eukaryotes  
Sample description Nitzschia punctata CCMP561  
Sample name MMETSP0746  
Taxon id 913974  

Strain CCMP561  
Genus Nitzschia  
Species punctata  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta