Sample: MMETSP0745


Sample Name MMETSP0745 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Nitzschia punctata CCMP561

Sample Accession CAM_SMPL_002748
Assembly  
Combined Assembly Nitzschia-punctata-CCMP561
Taxon ID 913974

Ph 8  
Phosphate 0.2  
Nitrate 2.97  
Silicate .42  
Axenic No  
Trace elements 19.73  
Experimental salinity 30  

Growth medium ASW  
Modifications to growth medium ASW for all nutrients except silicate, which was not added  

NCBI SRA SRS618946  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Project id 104  
Clonal 1  
Date of experiment 01-DEC-11  
External sample id N.punctata_Si-limited  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available growth, neutral lipid content (fluorometrically determined with Nile Red or Bodipy)  

GenBank BioSample 2740505  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP074/MMETSP0745.fastq.tar  

Day portion of day night cycle in hours 24  
Light 200  
Experimental temperature 20  

Library acc CAM_LIB_001514  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000566  
Combined assembly name Nitzschia-punctata-CCMP561  
Pcr amp No  

Source mat id (MMETSP0745) Nitzschia punctata  
Source mat id 3223  
Source mat id CAM_BM_002768  
Source mat id CAM_SMPL_002748  
Sample type eukaryotes  
Sample description Nitzschia punctata CCMP561  
Sample name MMETSP0745  
Taxon id 913974  

Strain CCMP561  
Genus Nitzschia  
Species punctata  
Family Bacillariaceae  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta