Sample: MMETSP0894


Sample Name MMETSP0894 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Heterosigma akashiwo CCMP 452

Sample Accession CAM_SMPL_002722
Assembly  
Combined Assembly Heterosigma-akashiwo-CCMP452
Taxon ID 536046

Ph 8.3  
Phosphate 365  
Nitrate 7520  
Ammonium 179  
Iron 7240000  
Axenic 1  
Trace elements 12800000  
Experimental salinity 30  

Longhurst province NWCS  

Growth medium O-3 Medium doi:10.1016/0003-2697(78)90546-8  

NCBI SRA SRS618972  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Long Island Sound  
Latitude 41  
Longitude -73  
Country UNITED STATES  
Country US  
Sample collection site Long Island Sound  

Project id 104  
Collection start time 1952-01-01 00:00:00.0  
Collection stop time 1952-01-01 00:00:00.0  
Clonal No  
Collection date 01-JAN-52  
Date of experiment 31-MAY-11  
External sample id Cyst formation: vegetative phase hr 6 day 0  
Investigation type EU  
Principle investigator Rose Ann Cattolico  
Additional citations DOI: 10.1021/bi00527a023, DOI: 10.1127/1438-9134/2010/0136-0261, PMID: PMC1185438, PMID: PMC2410131, DOI: 10.1046/j.1529-8817.2002.0187.x, PMID: PMC297543, PMID: PMC1074857, PMID: PMC386978, PMID: PMC1056607  
Primary citation PMID: PMC542060  
Other experimental metadata available 60 rpm agitation  

GenBank BioSample 2739950  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP089/MMETSP0894.fastq.tar  

Day portion of day night cycle in hours 12  
Light 40  
Experimental temperature 20  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001488  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000540  
Combined assembly name Heterosigma-akashiwo-CCMP452  
Pcr amp No  

Source mat id (MMETSP0894) Heterosigma akashiwo - Seawater  
Source mat id CAM_BM_002742  
Source mat id CAM_SMPL_002722  
Sample type eukaryotes  
Sample description Heterosigma akashiwo CCMP 452  
Sample name MMETSP0894  
Taxon id 536046  
Sample material Seawater  

Strain CCMP 452  
Genus Heterosigma  
Species akashiwo  
Family Chattonellaceae  
Order Chattonellales  
Superkingdom Eukaryota  
Class Raphidophyceae  
Phylum Ochrophyta