Sample: MMETSP0892


Sample Name MMETSP0892 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Aureoumbra lagunensis CCMP1510

Sample Accession CAM_SMPL_002720
Assembly  
Combined Assembly Aureoumbra-lagunensis-CCMP1510
Taxon ID 44058

Prey organism if applicable none  

Ph 7.8  
Dissolved oxygen 8  
Phosphate 0.5  
Ammonium 100  
Iron 1100  
Axenic Unknown  
Trace elements 1004  
Experimental salinity 32  
Environmental salinity 40  
Carbon dioxide 400  

Growth medium GSe media  
Modifications to growth medium Ammonium in place of nitrate  
Other environmental metadata available None  

NCBI SRA SRS618933  

Habitat name marine habitat  
Envo term for habitat primary term Aquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Estuarine  

Site name OTHER  
Latitude 27.4708  
Longitude -97.32  
Site description Bird Island Station, Laguna Madre, Texas USA  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site OTHER  
Other collection site info Bird Island Station, Laguna Madre, Texas USA  

Project id 104  
Collection start time 2092-01-01 12:00:00.0  
Collection stop time 2092-01-01 12:00:00.0  
Clonal 1  
Collection date 01-JAN-92  
Date of experiment 01-AUG-11  
External sample id Aureoumbra P-limited  
Investigation type EU  
Principle investigator Christopher Gobler  
Additional citations Gobler, C.J., and Sunda, W.G. 2006. Brown tides. In: Graneli, Turner, J.T. (eds), The Ecology of Harmful Algae, Springer-Verlag, pages 111-123  
Primary citation DeYoe, H.R., Stockwell, D.A., Bidigare, R.R., Latasa, M., Johnson, P.W., Hargraves, P.E., Suttle, C.A., 1997. Description and characterization of the algal species Aureoumbra lagunensis gen. et sp. nov. and referral of Aureoumbra and Aureococcus to the P  
Primary citation DeYoe, H.R., Stockwell, D.A., Bidigare, R.R., Latasa, M., Johnson, P.W., Hargraves, P.E., Suttle, C.A., 1997. Description and characterization of the algal species Aureoumbra lagunensis gen. et sp. nov. and referral of Aureoumbra and Aureococcus to the Pe  
Collection time 12:00 PM  
Other experimental metadata available CCMP1509 is the axenic version of CCMP1510  

GenBank BioSample 2740105  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP089/MMETSP0892.fastq.tar  

Pressure 1  
Day portion of day night cycle in hours 12  
Light 100  
Experimental temperature 22  
Night portion of day night cycle in hours 12  
Environmental temperature 30  

Library acc CAM_LIB_001486  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000538  
Combined assembly name Aureoumbra-lagunensis-CCMP1510  
Pcr amp No  

Source mat id (MMETSP0892) Aureoumbra lagunensis - seawater  
Source mat id 3195  
Source mat id CAM_BM_002740  
Source mat id CAM_SMPL_002720  
Sample type eukaryotes  
Sample description Aureoumbra lagunensis CCMP1510  
Sample name MMETSP0892  
Taxon id 44058  
Sample material seawater  

Strain CCMP1510  
Genus Aureoumbra  
Species lagunensis  
Family Sarcionochrysidaceae  
Superkingdom Eukaryota  
Class Pelagophyceae  
Phylum Ochrophyta  

N/A