Sample: MMETSP0889


Sample Name MMETSP0889 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pelagomonas calceolata CCMP1756

Sample Accession CAM_SMPL_002714
Assembly  
Combined Assembly Pelagomonas-calceolata-CCMP1756
Taxon ID 35677

Chlorophyll 1  
Prey organism if applicable none  

Ph 7.8  
Dissolved oxygen 8  
Phosphate 4  
Ammonium 100  
Iron 1100  
Axenic No  
Trace elements 1004  
Experimental salinity 32  
Environmental salinity 35  
Carbon dioxide 400  

Longhurst province NPTG  

Growth medium GSe media  
Modifications to growth medium Ammonium in place of nitrate  
Other environmental metadata available Representative data from the location of collection is available  

NCBI SRA SRS618897  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description open ocean mixed layer  

Site name Pacific_Ocean  
Latitude 30.8333  
Longitude -136.8333  
Country UNITED STATES  
Country US  
Depth 5  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2073-02-17 12:00:00.0  
Collection stop time 2073-02-17 12:00:00.0  
Clonal Unknown  
Collection date 17-FEB-73  
Date of experiment 19-AUG-11  
External sample id Pelagomonas light limited  
Investigation type EU  
Principle investigator Christopher Gobler  
Primary citation Journal of Phycology, Volume 29, Issue 5, pages 701–715, October 1993ULTRASTRUCTURE AND 18S RRNA GENE SEQUENCE FOR PELAGOMONAS CALCEOLATA GEN. ET SP. NOV. AND THE DESCRIPTION OF A NEW ALGAL CLASS, THE PELAGOPHYCEAE CLASSIS NOV  
Collection time 12:00 PM  
Other experimental metadata available CCMP1756 is the axenic version of CCMP1214  

GenBank BioSample 2740029  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP088/MMETSP0889.fastq.tar  

Pressure 1  
Day portion of day night cycle in hours 12  
Light 6  
Experimental temperature 22  
Night portion of day night cycle in hours 12  
Environmental temperature 25  

Library acc CAM_LIB_001480  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000532  
Combined assembly name Pelagomonas-calceolata-CCMP1756  
Pcr amp No  

Source mat id (MMETSP0889) Pelagomonas calceolata - seawater  
Source mat id 3189  
Source mat id CAM_BM_002734  
Source mat id CAM_SMPL_002714  
Sample type eukaryotes  
Sample description Pelagomonas calceolata CCMP1756  
Sample name MMETSP0889  
Taxon id 35677  
Sample material seawater  

Strain CCMP1756  
Genus Pelagomonas  
Species calceolata  
Family Pelagomonodaceae  
Superkingdom Eukaryota  
Class Pelagophyceae  
Phylum Ochrophyta  

N/A