Sample: MMETSP0725


Sample Name MMETSP0725 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Amphiprora sp. CCMP467

Sample Accession CAM_SMPL_002707
Assembly  
Combined Assembly Amphiprora-sp
Taxon ID 265536

Ph 8  
Phosphate 0.01  
Nitrate 0.55  
Axenic No  
Trace elements 16.33  
Experimental salinity 30  

Growth medium NEPC  
Modifications to growth medium NEPC for all nutrients except silicate which was not added  

NCBI SRA SRS618941  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Project id 104  
Clonal 1  
Date of experiment 01-DEC-11  
External sample id A.sp_Si-limited  
Investigation type EU  
Principle investigator Sarah Smith  
Other experimental metadata available growth, neutral lipid content (fluorometrically determined with Nile Red or Bodipy)  

GenBank BioSample 2740493  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP072/MMETSP0725.fastq.tar  

Day portion of day night cycle in hours 12  
Light 200  
Experimental temperature 20  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001473  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000525  
Combined assembly name Amphiprora-sp  
Pcr amp No  

Source mat id (MMETSP0725) Amphiprora sp.  
Source mat id CAM_BM_002727  
Source mat id CAM_SMPL_002707  
Sample type eukaryotes  
Sample description Amphiprora sp. CCMP467  
Sample name MMETSP0725  
Taxon id 265536  

Strain CCMP467  
Genus Amphiprora  
Species sp.  
Family Amphipleuraceae  
Order Naviculales  
Superkingdom Eukaryota  
Class Bacillariophyceae  
Phylum Bacillariophyta