Sample: MMETSP1001


Sample Name MMETSP1001 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Ditylum brightwellii GSO105

Sample Accession CAM_SMPL_002705
Assembly  
Combined Assembly Ditylum-brightwellii-GSO105
Taxon ID 49249

Ph 7.9  
Phosphate 36.2  
Nitrate 2  
Silicate 106  
Axenic 1  
Experimental salinity 36  

Longhurst province CCAL  

Growth medium f/2 amended Sargasso seawater  
Modifications to growth medium f/2 for all nutrients except no Nitrate was added  

NCBI SRA SRS621386  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  

Site name Pacific_Ocean  
Latitude 47.74  
Longitude -122.417  
Country UNITED STATES  
Country US  
Depth 0.5  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2007-05-12 00:00:00.0  
Collection stop time 2007-05-12 00:00:00.0  
Clonal 1  
Collection date 12-MAY-07  
Date of experiment 30-OCT-11  
External sample id GSO105-N Limit  
Investigation type EU  
Principle investigator Tatiana Rynearson  
Additional citations ##############################################################################################################################################################################################################################################################  
Additional citations ###############################################################################################################################################################################################################################################################  
Primary citation (West) Grunow in Van Huerck, 1880-1885  
Other experimental metadata available Axenic  

GenBank BioSample 2740248  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP100/MMETSP1001.fastq.tar  

Day portion of day night cycle in hours 12  
Light 180  
Experimental temperature 14  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001471  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000523  
Combined assembly name Ditylum-brightwellii-GSO105  
Pcr amp No  

Source mat id (MMETSP1001) Ditylum brightwellii - Seawater  
Source mat id 3180  
Source mat id CAM_BM_002725  
Source mat id CAM_SMPL_002705  
Sample type eukaryotes  
Sample description Ditylum brightwellii GSO105  
Sample name MMETSP1001  
Taxon id 49249  
Sample material Seawater  

Strain GSO105  
Genus Ditylum  
Species brightwellii  
Family Lithodesmiaceae  
Order Lithodesmiales  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A