Sample: MMETSP0958


Sample Name MMETSP0958 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Aurantiochytrium limacinum ATCCMYA-1381

Sample Accession CAM_SMPL_002701
Assembly  
Combined Assembly Aurantiochytrium-limacinum-ATCCMYA1381
Taxon ID 87120

Ph 8  
Axenic 1  
Experimental salinity 25  

Longhurst province WARM  

Growth medium ATCC medium 790BY+ agar plates  
Modifications to growth medium glucose, peptone, yeast extract at half concentration; 25g Instant Ocean per liter instead of filtered seawater, solidified with 0.8% agar  
Other environmental metadata available none available  

NCBI SRA SRS621383  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  
Habitat description Seawater in mangrove area, Colonia, Yap Islands, Micronesia  

Site name Pacific_Ocean  
Latitude 9.53333  
Longitude 138.11667  
Country FM  
Country MICRONESIA, FEDERATED STATES OF  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 1994-07-15 00:00:00.0  
Collection stop time 1994-07-15 00:00:00.0  
Clonal 1  
Collection date 15-JUL-94  
Date of experiment 24-DEC-11  
External sample id Aurant. limacinum ATCCMYA-1381 790By+  
Investigation type EU  
Principle investigator Jackie Collier  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Honda, D., Yokochi, T., Nakahara, T., Erata, M. & Hig  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Honda, D., Yokochi, T., Nakahara, T., Erata, M. & Higa  
Primary citation Yokoyama and Honda (2007) Taxonomic rearrangement of the genus Schizochytrium sensu lato based on morphology, chemotaxonomic characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation for Schizochytrium and erecti  
Primary citation Yokoyama and Honda (2007) Taxonomic rearrangement of the genus Schizochytrium sensu lato based on morphology, chemotaxonomic characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation for Schizochytrium and erectio  
Other experimental metadata available Harvested 498 mg (wet weight) biomass from 10 plates after 4 days of growth  

GenBank BioSample 2740117  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP095/MMETSP0958.fastq.tar  

Pressure 1  
Experimental temperature 23  

Library acc CAM_LIB_001467  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000519  
Combined assembly name Aurantiochytrium-limacinum-ATCCMYA1381  
Pcr amp No  

Source mat id (MMETSP0958) Aurantiochytrium limacinum  
Source mat id CAM_BM_002721  
Source mat id CAM_SMPL_002701  
Sample type eukaryotes  
Sample description Aurantiochytrium limacinum ATCCMYA-1381  
Sample name MMETSP0958  
Taxon id 87120  
Sample material Seawater in mangrove area, Colonia, Yap Islands, Micronesia  

Strain ATCCMYA-1381  
Genus Aurantiochytrium  
Species limacinum  
Family Thraustochytriidae  
Order Boletales  
Superkingdom Eukaryota  
Class Labyrinthulea  
Phylum Labyrinthista