Sample: MMETSP0970


Sample Name MMETSP0970 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thalassiosira oceanica CCMP1005

Sample Accession CAM_SMPL_002690
Assembly  
Combined Assembly Thalassiosira-oceanica-CCMP1005
Taxon ID 159749

Ph 8.2  
Phosphate 36.2  
Nitrate 882  
Silicate 106  
Iron 400  
Axenic 1  
Trace elements 1093.8  
Experimental salinity 35  
Environmental salinity 36.32  

Longhurst province NASW  

Growth medium f/2 amended seawater  
Modifications to growth medium f/2 for all nutrients except iron, which was added at 400nM  

NCBI SRA SRS621319  

Habitat name marine habitat  
Habitat marine habitat  

Site name Sargasso Sea  
Latitude 33.1833  
Longitude -65.25  
Sample collection site Sargasso Sea  

Project id 104  
Collection start time 1958-12-11 00:00:00.0  
Collection stop time 1958-12-11 00:00:00.0  
Clonal 1  
Collection date 11-DEC-58  
Date of experiment 19-JUN-11  
External sample id CCMP1005_Replete  
Investigation type EU  
Principle investigator Bethany Jenkins  
Additional citations Mock, T. et al. Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses. P Natl Acad Sci Usa 105, 1579-1584 (2008).  
Primary citation von Dassow, P., Petersen, T. W., Chepurnov, V. A. & Armbrust, E. V. Inter- and intraspecific relationships between nuclear DNA content and cell size in selected members of the centric diatom genus Thalassiosira (Bacillariophyceae). J Phycol 44, 335-349 (  
Primary citation von Dassow, P., Petersen, T. W., Chepurnov, V. A. & Armbrust, E. V. Inter- and intraspecific relationships between nuclear DNA content and cell size in selected members of the centric diatom genus Thalassiosira (Bacillariophyceae). J Phycol 44, 335-349 (2  
Other experimental metadata available Sampled at midpoint of light cycle. Trace elements: 39.3 nM Cu; 26 nM Mo; 76.5 nM Zn; 42 nM Co; 910 nM Mn; EDTA = 11.7 uM  

GenBank BioSample 2739969  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP097/MMETSP0970.fastq.tar  

Day portion of day night cycle in hours 14  
Light 120  
Experimental temperature 25  
Night portion of day night cycle in hours 10  
Environmental temperature 22.7  

Library acc CAM_LIB_001456  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000508  
Combined assembly name Thalassiosira-oceanica-CCMP1005  
Pcr amp No  

Source mat id (MMETSP0970) Thalassiosira oceanica - seawater  
Source mat id 3165  
Source mat id CAM_BM_002710  
Source mat id CAM_SMPL_002690  
Sample type eukaryotes  
Sample description Thalassiosira oceanica CCMP1005  
Sample name MMETSP0970  
Taxon id 159749  
Sample material seawater  

Strain CCMP1005  
Genus Thalassiosira  
Species oceanica  
Family Skeletonemaceae  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A