Sample: MMETSP1013


Sample Name MMETSP1013 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Ditylum brightwellii GSO104

Sample Accession CAM_SMPL_002686
Assembly  
Combined Assembly Ditylum-brightwellii-GSO104
Taxon ID 49249

Ph 7.9  
Phosphate 36.2  
Nitrate 2  
Silicate 106  
Axenic 1  
Experimental salinity 36  

Longhurst province NWCS  

Growth medium f/2 amended seawater  
Modifications to growth medium f/2 for all nutrients except no nitrate added  

NCBI SRA SRS621388  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Coastal Waters  

Site name Pacific_Ocean  
Latitude 41.325  
Longitude -70.57  
Site description Martha's Vineyard Coastal Observatory  
Country UNITED STATES  
Country US  
Depth 0.5  
Sample collection site Pacific_Ocean  
Other collection site info Martha's Vineyard Coastal Observatory  

Project id 104  
Collection start time 2008-10-06 00:00:00.0  
Collection stop time 2008-10-06 00:00:00.0  
Clonal 1  
Collection date 06-OCT-08  
Date of experiment 05-NOV-11  
External sample id GSO104-0N  
Investigation type EU  
Principle investigator Tatiana Rynearson  
Additional citations ##############################################################################################################################################################################################################################################################  
Additional citations ###############################################################################################################################################################################################################################################################  
Other experimental metadata available Axenic  

GenBank BioSample 2740287  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP101/MMETSP1013.fastq.tar  

Day portion of day night cycle in hours 12  
Light 180  
Experimental temperature 14  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001452  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000504  
Combined assembly name Ditylum-brightwellii-GSO104  
Pcr amp No  

Source mat id (MMETSP1013) Ditylum brightwellii - Seawater  
Source mat id 3161  
Source mat id CAM_BM_002706  
Source mat id CAM_SMPL_002686  
Sample type eukaryotes  
Sample description Ditylum brightwellii GSO104  
Sample name MMETSP1013  
Taxon id 49249  
Sample material Seawater  

Strain GSO104  
Genus Ditylum  
Species brightwellii  
Family Lithodesmiaceae  
Order Lithodesmiales  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A