Sample: MMETSP0962


Sample Name MMETSP0962 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Schizochytrium aggregatum ATCC28209

Sample Accession CAM_SMPL_002670
Assembly  
Combined Assembly Schizochytrium-aggregatum-ATCC28209
Taxon ID 4773

Ph 8  
Axenic 1  
Experimental salinity 25  

Longhurst province ARAB  

Growth medium ATCC medium 790BY+ (0.8% agar plates)  
Modifications to growth medium glucose, peptone, yeast extract at half concentration; 25g Instant Ocean per liter instead of filtered seawater; solidified with 0.8% agar  
Other environmental metadata available none available  

NCBI SRA SRS621501  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  
Habitat description Seawater off West Germany  

Site name North Sea  
Latitude 8  
Longitude 53  
Country DE  
Country GERMANY  
Sample collection site North Sea  

Project id 104  
Collection start time 1963-07-15 00:00:00.0  
Collection stop time 1963-07-15 00:00:00.0  
Clonal 1  
Collection date 15-JUL-63  
Date of experiment 06-JUN-12  
External sample id Schiz. aggregatum ATCC28209 790By+  
Investigation type EU  
Principle investigator Jackie Collier  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Bremer, G. B. & Talbot, G. 1995. Cellulolytic enzyme  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Bremer, G. B. & Talbot, G. 1995. Cellulolytic enzyme a  
Primary citation Goldstein, S. & Belsky, M. 1964. Axenic culture studies of a new marine phycomycete possessing an unusual type of asexual reproduction. American Journal of Botany 51:72-78  
Other experimental metadata available Harvested 575 mg (wet weight) biomass from 10 plates after 5 days of growth  

GenBank BioSample 2739982  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP096/MMETSP0962.fastq.tar  

Pressure 1  
Experimental temperature 23  

Library acc CAM_LIB_001436  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000488  
Combined assembly name Schizochytrium-aggregatum-ATCC28209  
Pcr amp No  

Source mat id (MMETSP0962) Schizochytrium aggregatum - Seawater  
Source mat id CAM_BM_002690  
Source mat id CAM_SMPL_002670  
Sample type eukaryotes  
Sample description Schizochytrium aggregatum ATCC28209  
Sample name MMETSP0962  
Taxon id 4773  
Sample material Seawater  

Strain ATCC28209  
Genus Schizochytrium  
Species aggregatum  
Family Thraustochytriaceae  
Order Labyrinthulomycetes  
Superkingdom Eukaryota  
Class Labyrinthulea  
Phylum Labyrinthista  

N/A