Sample: MMETSP0960


Sample Name MMETSP0960 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Aurantiochytrium limacinum ATCCMYA-1381

Sample Accession CAM_SMPL_002657
Assembly  
Combined Assembly Aurantiochytrium-limacinum-ATCCMYA1381
Taxon ID 87120

Ph 8  
Axenic 1  
Experimental salinity 25  

Longhurst province WARM  

Growth medium artificial seawater with 0.125% Artemia detritus (0.8% agar plates)  
Modifications to growth medium artificial seawater (25 grams per liter Instant Ocean), 0.125% freeze dried and ground Artemia (wt:vol), plus 0.8% agar  
Other environmental metadata available none available  

NCBI SRA SRS621427  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Other  
Habitat marine habitat  
Habitat description Seawater in mangrove area, Colonia, Yap Islands, Micronesia  

Site name Pacific_Ocean  
Latitude 9.53333  
Longitude 138.11667  
Country FM  
Country MICRONESIA, FEDERATED STATES OF  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 1994-07-15 00:00:00.0  
Collection stop time 1994-07-15 00:00:00.0  
Clonal 1  
Collection date 15-JUL-94  
Date of experiment 26-FEB-12  
External sample id Aurant. limacinum ATCCMYA-1381 Artemia detritus  
Investigation type EU  
Principle investigator Jackie Collier  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Honda, D., Yokochi, T., Nakahara, T., Erata, M. & Hig  
Additional citations Collado Mercado, E., Radway, J. C. & Collier, J. L. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-28. Honda, D., Yokochi, T., Nakahara, T., Erata, M. & Higa  
Primary citation Yokoyama and Honda (2007) Taxonomic rearrangement of the genus Schizochytrium sensu lato based on morphology, chemotaxonomic characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation for Schizochytrium and erecti  
Primary citation Yokoyama and Honda (2007) Taxonomic rearrangement of the genus Schizochytrium sensu lato based on morphology, chemotaxonomic characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation for Schizochytrium and erectio  
Other experimental metadata available Harvested 300 mg (wet weight) biomass from 20 plates after 9 days of growth  

GenBank BioSample 2740119  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP096/MMETSP0960.fastq.tar  

Pressure 1  
Experimental temperature 23  

Library acc CAM_LIB_001423  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000475  
Combined assembly name Aurantiochytrium-limacinum-ATCCMYA1381  
Pcr amp No  

Source mat id (MMETSP0960) Aurantiochytrium limacinum  
Source mat id CAM_BM_002677  
Source mat id CAM_SMPL_002657  
Sample type eukaryotes  
Sample description Aurantiochytrium limacinum ATCCMYA-1381  
Sample name MMETSP0960  
Taxon id 87120  
Sample material Seawater in mangrove area, Colonia, Yap Islands, Micronesia  

Strain ATCCMYA-1381  
Genus Aurantiochytrium  
Species limacinum  
Family Thraustochytriidae  
Order Boletales  
Superkingdom Eukaryota  
Class Labyrinthulea  
Phylum Labyrinthista