Sample: MMETSP1074


Sample Name MMETSP1074 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Ceratium fusus PA161109

Sample Accession CAM_SMPL_002648
Assembly  
Combined Assembly Ceratium-fusus-PA161109
Taxon ID 2916

Phosphate 36.2  
Nitrate 882  
Silicate 10  
Axenic No  
Experimental salinity 29.4  
Environmental salinity 27.87  

Longhurst province NWCS  

Growth medium f/2-Si amended seawater  
Modifications to growth medium f/2 for all nutrients except eliminate Si  
Other environmental metadata available www.gso.uri.edu/phytoplankton  

NCBI SRA SRS621394  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description Estuary  

Site name OTHER  
Latitude 41.57083  
Longitude -71.40517  
Site description Long term plankton time series station, Narragansett Bay  
Country UNITED STATES  
Country US  
Depth 5  
Sample collection site OTHER  
Other collection site info Long term plankton time series station, Narragansett Bay  

Project id 104  
Collection start time 2010-11-16 07:00:00.0  
Collection stop time 2010-11-16 07:00:00.0  
Clonal 1  
Collection date 16-NOV-10  
Date of experiment 16-NOV-11  
External sample id C. fusus - HL  
Investigation type EU  
Principle investigator Susanne Menden-Deuer  
Additional citations doi:10.3354/ame017167; doi:10.1016/j.hal.2008.02.007  
Primary citation doi:10.1111/j.1550-7408.2002.tb00343.x  
Collection time 07:00 AM  
Other experimental metadata available not axenic  

GenBank BioSample 2740353  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP107/MMETSP1074.fastq.tar  

Day portion of day night cycle in hours 12  
Light 120  
Experimental temperature 15  
Night portion of day night cycle in hours 12  
Environmental temperature 11.3  

Library acc CAM_LIB_001414  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000466  
Combined assembly name Ceratium-fusus-PA161109  
Pcr amp No  

Source mat id (MMETSP1074) Ceratium fusus - seawater  
Source mat id 3123  
Source mat id CAM_BM_002668  
Source mat id CAM_SMPL_002648  
Sample type eukaryotes  
Sample description Ceratium fusus PA161109  
Sample name MMETSP1074  
Taxon id 2916  
Sample material seawater  

Strain PA161109  
Genus Ceratium  
Species fusus  
Family Ceratiaceae  
Order Gonyaulacales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta