Sample: MMETSP1097


Sample Name MMETSP1097 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pseudopedinella elastica CCMP716

Sample Accession CAM_SMPL_002636
Assembly  
Combined Assembly Pseudopedinella-elastica-CCMP716
Taxon ID 35684

Ph 8  
Axenic No  
Experimental salinity 36  
Environmental salinity 36  

Longhurst province NWCS  

Growth medium Marine Media K  
Modifications to growth medium No silica  

NCBI SRA SRS621406  

Habitat name marine habitat  
Habitat marine habitat  

Site name Gulf of Maine  
Latitude 43  
Longitude -68  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site Gulf of Maine  

Project id 104  
Collection start time 1988-09-30 00:00:00.0  
Collection stop time 1988-09-30 00:00:00.0  
Clonal Unknown  
Collection date 30-SEP-88  
Date of experiment 19-DEC-11  
External sample id P.elastica  
Investigation type EU  
Principle investigator David Caron  
Additional citations Caron, D.A. 2000. Symbiosis and mixotrophy among pelagic microorganisms. In: Kirchman, D.L. (Ed.), Microbial ecology of the oceans, John Wiley & Sons, Inc., New York, pp. 495-523.  

GenBank BioSample 2740078  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP109/MMETSP1097.fastq.tar  

Day portion of day night cycle in hours 12  
Light 300  
Experimental temperature 18  
Night portion of day night cycle in hours 12  
Environmental temperature 18  

Library acc CAM_LIB_001402  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000454  
Combined assembly name Pseudopedinella-elastica-CCMP716  
Pcr amp No  

Source mat id (MMETSP1097) Pseudopedinella elastica - Seawater  
Source mat id 3111  
Source mat id CAM_BM_002656  
Source mat id CAM_SMPL_002636  
Sample type eukaryotes  
Sample description Pseudopedinella elastica CCMP716  
Sample name MMETSP1097  
Taxon id 35684  
Sample material Seawater  

Strain CCMP716  
Genus Pseudopedinella  
Species elastica  
Family Pedinellaceae  
Order Pedinellales  
Superkingdom Eukaryota  
Class Dictyochophyceae  
Phylum Ochrophyta