Sample: MMETSP1068


Sample Name MMETSP1068 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Pseudopedinella elastica CCMP716

Sample Accession CAM_SMPL_002632
Assembly  
Combined Assembly Pseudopedinella-elastica-CCMP716
Taxon ID 35684

Ph 8  
Phosphate 36.2  
Nitrate 882  
Silicate 106  
Axenic No  
Trace elements 24.6634  
Experimental salinity 21  

Growth medium f/2  
Other environmental metadata available no other types of environmental metadata available  

NCBI SRA SRS621489  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  

Site name Atlantic_Ocean  
Latitude 43  
Longitude -68  
Longitude 68  
Site description Gulf of Maine (approx.)  
Country UNITED STATES  
Country US  
Sample collection site Atlantic_Ocean  
Other collection site info Gulf of Maine (approx.)  

Project id 104  
Collection start time 1988-09-30 00:00:00.0  
Collection stop time 1988-09-30 00:00:00.0  
Volume unit L  
Filter min 0.8  
Filter max 3  
Clonal 1  
Collection date 30-SEP-88  
Date of experiment 13-OCT-11  
External sample id Pseudopedinella elastica  
Investigation type EU  
Principle investigator E. Virginia Armbrust  
Filter fraction maximum 3  
Filter fraction minimum 0.8  
Volume filtered 4  

GenBank BioSample 2740077  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP106/MMETSP1068.fastq.tar  

Day portion of day night cycle in hours 16  
Light 166  
Experimental temperature 13  
Night portion of day night cycle in hours 8  

Library acc CAM_LIB_001398  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000450  
Combined assembly name Pseudopedinella-elastica-CCMP716  
Pcr amp No  

Source mat id (MMETSP1068) Pseudopedinella elastica - Seawater  
Source mat id CAM_BM_002652  
Source mat id CAM_SMPL_002632  
Sample type eukaryotes  
Sample description Pseudopedinella elastica CCMP716  
Sample name MMETSP1068  
Sample volume 4  
Taxon id 35684  
Sample material Seawater  

Strain CCMP716  
Genus Pseudopedinella  
Species elastica  
Family Pedinellaceae  
Order Pedinellales  
Superkingdom Eukaryota  
Class Dictyochophyceae  
Phylum Ochrophyta