Sample: MMETSP1117


Sample Name MMETSP1117 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Symbiodinium sp. CCMP2430

Sample Accession CAM_SMPL_002615
Assembly  
Combined Assembly Symbiodinium-sp-CCMP2430
Taxon ID 631057

Ph 8.1  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 12794  
Experimental salinity 34  

Longhurst province AUSE  

Growth medium f/2 amended seawater  
Modifications to growth medium f/2 for all nutrients, no Na2SiO3 added  

NCBI SRA SRS621364  

Habitat name marine habitat  
Habitat marine habitat  

Site name Pacific_Ocean  
Latitude -23.5  
Longitude 152  
Country AU  
Country AUSTRALIA  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2000-08-01 00:00:00.0  
Collection stop time 2000-08-01 00:00:00.0  
Clonal No  
Collection date 01-AUG-00  
Date of experiment 01-OCT-11  
External sample id CCMP2430 +UV mid-crash  
Investigation type EU  
Principle investigator William Wilson  
Other experimental metadata available 1 L of exponentially-growing culture will be exposed to UV light (254 nm) for 2 minutes then returned to normal growth conditions. RNA will be harvested mid-way through UV-induced population crash.  

GenBank BioSample 2740189  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP111/MMETSP1117.fastq.tar  

Day portion of day night cycle in hours 12  
Light 200  
Experimental temperature 25  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001381  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000433  
Combined assembly name Symbiodinium-sp-CCMP2430  
Pcr amp No  

Source mat id (MMETSP1117) Symbiodinium sp.  
Source mat id CAM_BM_002635  
Source mat id CAM_SMPL_002615  
Sample type eukaryotes  
Sample description Symbiodinium sp. CCMP2430  
Sample name MMETSP1117  
Taxon id 631057  

Strain CCMP2430  
Genus Symbiodinium  
Species sp.  
Family Symbiodiniaceae  
Order Suessiales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta