Sample: MMETSP1038


Sample Name MMETSP1038 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Azadinium spinosum 3D9

Sample Accession CAM_SMPL_002592
Assembly  
Combined Assembly Azadinium-spinosum-3D9
Taxon ID 632150

Ph 8  
Phosphate 3.6  
Nitrate 88  
Iron 1.17  
Axenic 1  
Trace elements 107.6  
Experimental salinity 26  
Environmental salinity 34  

Longhurst province NECS  

Growth medium half stength K (Keller et al. 1987) amended seawater  
Modifications to growth medium supplemented with selenite (Dahl et al. 1989)  

NCBI SRA SRS621403  

Habitat name marine habitat  
Habitat marine habitat  
Habitat description coastal North Sea water  

Site name North Sea  
Latitude 57.0525  
Longitude 2.50056  
Country GB  
Country UNITED KINGDOM  
Sample collection site North Sea  

Project id 104  
Collection start time 2007-06-15 00:00:00.0  
Collection stop time 2007-06-15 00:00:00.0  
Volume unit L  
Filter min 3  
Filter max 20  
Clonal 1  
Collection date 15-JUN-07  
Date of experiment 15-MAY-11  
External sample id 3D9_salinity  
Investigation type EU  
Principle investigator Uwe John  
Primary citation Tillmann,U., Elbraechter,M., Krock,B., John,U. and Cembella,A.(2009). Azadinium spinosum gen. et sp. nov. (Dinophyceae) identified as a primary producer of azaspiracid toxins. Eur. J. Phycol. 44 (1), 63-79  
Filter fraction maximum 20  
Filter fraction minimum 3  
Volume filtered 1  

GenBank BioSample 2740255  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP103/MMETSP1038.fastq.tar  

Day portion of day night cycle in hours 14  
Light 90  
Experimental temperature 20  
Night portion of day night cycle in hours 10  
Environmental temperature 12  

Library acc CAM_LIB_001358  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000410  
Combined assembly name Azadinium-spinosum-3D9  
Pcr amp No  

Source mat id (MMETSP1038) Azadinium spinosum - Seawater  
Source mat id 3067  
Source mat id CAM_BM_002612  
Source mat id CAM_SMPL_002592  
Sample type eukaryotes  
Sample description Azadinium spinosum 3D9  
Sample name MMETSP1038  
Sample volume 1  
Taxon id 632150  
Sample material Seawater  

Strain 3D9  
Genus Azadinium  
Species spinosum  
Family Unknown  
Order Gonyaulacales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta