Sample: MMETSP1035


Sample Name MMETSP1035 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Lingulodinium polyedra CCMP 1738

Sample Accession CAM_SMPL_002589
Assembly  
Combined Assembly Lingulodinium-polyedra-CCMP1738
Taxon ID 160621

Ph 8.3  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 24500  
Experimental salinity 28  

Growth medium f/2 - Si artificial seawater  
Modifications to growth medium f/2 for all nutrients, minus the addition of Si  

NCBI SRA SRS621352  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Gulf of Mexico off the coast of Texas  

Site name Gulf of Mexico  
Latitude 27.8  
Longitude -97.13  
Longitude 97.13  
Site description Texas Coast  
Country UNITED STATES  
Country US  
Sample collection site Gulf of Mexico  
Other collection site info Texas Coast  

Project id 104  
Clonal 1  
Date of experiment 09-SEP-11  
External sample id 1738 dark 24 hrs extended  
Investigation type EU  
Principle investigator Mary Ann Moran  
Additional citations Tanikawa, N., H. Akimoto, K. Ogoh, W. Chun, and Y. Ohmiya. 2004. Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 80:31-5. Mayali, X., P. J. Franks, and F. Azam. 2008. Cultivation and ec  
Additional citations Tanikawa, N., H. Akimoto, K. Ogoh, W. Chun, and Y. Ohmiya. 2004. Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 80:31-5. Mayali, X., P. J. Franks, and F. Azam. 2008. Cultivation and eco  
Other experimental metadata available Chlorophyll, DMSPt, DMSPd, and DMSPp will be measured. Dimethylsulfonium derivatives will also be analyzed.  

GenBank BioSample 2740538  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP103/MMETSP1035.fastq.tar  

Day portion of day night cycle in hours 12  
Light 150  
Experimental temperature 18  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001355  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000407  
Combined assembly name Lingulodinium-polyedra-CCMP1738  
Pcr amp No  

Source mat id (MMETSP1035) Lingulodinium polyedra  
Source mat id CAM_BM_002609  
Source mat id CAM_SMPL_002589  
Sample type eukaryotes  
Sample description Lingulodinium polyedra CCMP 1738  
Sample name MMETSP1035  
Taxon id 160621  

Strain CCMP 1738  
Genus Lingulodinium  
Species polyedra  
Family Gonyaulacaceae  
Order Gonyaulacales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta