Sample: MMETSP1002


Sample Name MMETSP1002 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Ditylum brightwellii GSO103

Sample Accession CAM_SMPL_002583
Assembly  
Combined Assembly Ditylum-brightwellii-GSO103
Taxon ID 49249

Ph 7.9  
Phosphate 36.2  
Nitrate 882  
Silicate 106  
Axenic 1  
Experimental salinity 36  

Longhurst province CCAL  

Growth medium f/2 amended seawater  
Modifications to growth medium f/2 for all nutrients  

NCBI SRA SRS616865  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Coastal waters  

Site name Pacific_Ocean  
Latitude 49.654  
Longitude -127.436  
Country UNITED STATES  
Country US  
Depth 0.5  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2007-05-13 00:00:00.0  
Collection stop time 2007-05-13 00:00:00.0  
Clonal 1  
Collection date 13-MAY-07  
Date of experiment 31-AUG-11  
External sample id GSO103-replete  
Investigation type EU  
Principle investigator Tatiana Rynearson  
Additional citations ##############################################################################################################################################################################################################################################################  
Additional citations ###############################################################################################################################################################################################################################################################  
Primary citation (West) Grunow in Van Huerck, 1880-1885  
Other experimental metadata available Axenic  

GenBank BioSample 2740251  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP100/MMETSP1002.fastq.tar  

Day portion of day night cycle in hours 12  
Light 180  
Experimental temperature 14  
Night portion of day night cycle in hours 12  
Environmental temperature 6.1  

Library acc CAM_LIB_001349  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000401  
Combined assembly name Ditylum-brightwellii-GSO103  
Pcr amp No  

Source mat id (MMETSP1002) Ditylum brightwellii - Seawater  
Source mat id 3058  
Source mat id CAM_BM_002603  
Source mat id CAM_SMPL_002583  
Sample type eukaryotes  
Sample description Ditylum brightwellii GSO103  
Sample name MMETSP1002  
Taxon id 49249  
Sample material Seawater  

Strain GSO103  
Genus Ditylum  
Species brightwellii  
Family Lithodesmiaceae  
Order Lithodesmiales  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A