Sample: MMETSP0434


Sample Name MMETSP0434 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Favella taraikaensis Fe Narragansett Bay

Sample Accession CAM_SMPL_002561
Assembly  
Combined Assembly Favella_taraikaensis_FeNarragansettBay
Taxon ID 626734

Prey organism if applicable Heterosigma akashiwo CCMP3107  

Axenic No  
Experimental salinity 29.4  
Environmental salinity 30.68  

Longhurst province NWCS  

Growth medium seawater  
Modifications to growth medium 0.2um filtered, autoclaved  

NCBI SRA SRS619052  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Atlantic_Ocean  
Latitude 41.30051  
Longitude -71.71543  
Site description off shore of Quonochontaug Pond, Rhode Island  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site Atlantic_Ocean  
Other collection site info off shore of Quonochontaug Pond, Rhode Island  

Project id 104  
Collection start time 2010-05-22 00:00:00.0  
Collection stop time 2010-05-22 00:00:00.0  
Clonal 1  
Collection date 22-MAY-10  
Date of experiment 28-MAR-12  
External sample id Ha3107 + Fe  
Investigation type EU  
Principle investigator Susanne Menden-Deuer  
Primary citation doi:10.4319/lo.2011.56.1.0371  
Other experimental metadata available not axenic; hungry Favella cultures were exposed to Heterosigma for 24hours and then harvested  

GenBank BioSample 2740332  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP043/MMETSP0434.fastq.tar  

Day portion of day night cycle in hours 12  
Light 8  
Experimental temperature 15  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001327  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000379  
Combined assembly name Favella_taraikaensis_FeNarragansettBay  
Pcr amp No  

Source mat id (MMETSP0434) Favella taraikaensis - seawater  
Source mat id 3036  
Source mat id CAM_BM_002581  
Source mat id CAM_SMPL_002561  
Sample type eukaryotes  
Sample description Favella taraikaensis Fe Narragansett Bay  
Sample name MMETSP0434  
Taxon id 626734  
Sample material seawater  

Strain Fe Narragansett Bay  
Genus Favella  
Species taraikaensis  
Family Ptychocylididae  
Order Tintinnida  
Superkingdom Eukaryota  
Class Spirotrichea  
Phylum Ciliophora  

N/A