Sample: MMETSP0410


Sample Name MMETSP0410 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Heterosigma akashiwo CCMP3107

Sample Accession CAM_SMPL_002557
Assembly  
Combined Assembly Heterosigma-akashiwo-CCMP3107
Taxon ID 536047

Phosphate 36.2  
Nitrate 882  
Silicate 106  
Axenic No  
Experimental salinity 15  

Longhurst province ALSK  

Growth medium f/2-Si amended seawater  
Modifications to growth medium f/2 for all nutrients except eliminate Si  

NCBI SRA SRS618892  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  

Site name Pacific_Ocean  
Latitude 52.5758  
Longitude -128.5003  
Site description Nowish Inlet, Queen Charlotte Sound  
Country CA  
Country CANADA  
Depth 0.5  
Sample collection site Pacific_Ocean  
Other collection site info Nowish Inlet, Queen Charlotte Sound  

Project id 104  
Collection start time 2008-09-15 00:00:00.0  
Collection stop time 2008-09-15 00:00:00.0  
Clonal 1  
Collection date 15-SEP-08  
Date of experiment 16-AUG-11  
External sample id 3107 Low Salinity  
Investigation type EU  
Principle investigator Susanne Menden-Deuer  
Additional citations Smayda et al 1993 Toxic Phytoplankton Blooms in the Sea  
Primary citation doi:10.4319/lo.2011.56.1.0371  
Other experimental metadata available not axenic  

GenBank BioSample 2740283  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP041/MMETSP0410.fastq.tar  

Day portion of day night cycle in hours 12  
Light 75  
Experimental temperature 15  
Night portion of day night cycle in hours 12  

Library acc CAM_LIB_001323  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000375  
Combined assembly name Heterosigma-akashiwo-CCMP3107  
Pcr amp No  

Source mat id (MMETSP0410) Heterosigma akashiwo - Seawater  
Source mat id 3032  
Source mat id CAM_BM_002577  
Source mat id CAM_SMPL_002557  
Sample type eukaryotes  
Sample description Heterosigma akashiwo CCMP3107  
Sample name MMETSP0410  
Taxon id 536047  
Sample material Seawater  

Strain CCMP3107  
Genus Heterosigma  
Species akashiwo  
Family Chattonellaceae  
Order Chattonellales  
Superkingdom Eukaryota  
Class Raphidophyceae  
Phylum Ochrophyta