Sample: MMETSP0403


Sample Name MMETSP0403 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thalassiosira rotula CCMP3096

Sample Accession CAM_SMPL_002553
Assembly  
Combined Assembly Thalassiosira-rotula-CCMP3096
Taxon ID 49265

Ph 8.2  
Phosphate 36.2  
Nitrate 882  
Silicate 106  
Axenic 1  
Experimental salinity 35  

Longhurst province CCAL  

Growth medium f/2  

NCBI SRA SRS618871  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Coastal waters, Northeast Pacific  

Site name Pacific_Ocean  
Latitude 49.65  
Longitude -127.4338  
Country CA  
Country CANADA  
Sample collection site Pacific_Ocean  

Project id 104  
Collection start time 2007-05-13 20:00:00.0  
Collection stop time 2007-05-13 20:00:00.0  
Clonal 1  
Collection date 13-MAY-07  
Date of experiment 11-JUL-11  
External sample id f/2, light cycle  
Investigation type EU  
Principle investigator Bethany Jenkins  
Additional citations Guillard, R.R.L. 1975. Culture of phytoplankton for feeding marine invertebrates. pp 26-60. In Smith W.L. and Chanley M.H (Eds.) Culture of Marine Invertebrate Animals. Plenum Press, New York, USA.  
Collection time 08:00 PM  

GenBank BioSample 2740249  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP040/MMETSP0403.fastq.tar  

Day portion of day night cycle in hours 12  
Light 125  
Experimental temperature 18  
Night portion of day night cycle in hours 12  
Environmental temperature 8  

Library acc CAM_LIB_001319  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000371  
Combined assembly name Thalassiosira-rotula-CCMP3096  
Pcr amp No  

Source mat id (MMETSP0403) Thalassiosira rotula - seawater  
Source mat id 3028  
Source mat id CAM_BM_002573  
Source mat id CAM_SMPL_002553  
Sample type eukaryotes  
Sample description Thalassiosira rotula CCMP3096  
Sample name MMETSP0403  
Taxon id 49265  
Sample material seawater  

Strain CCMP3096  
Genus Thalassiosira  
Species rotula  
Family Skeletonemaceae  
Superkingdom Eukaryota  
Class Coscinodiscophyceae  
Phylum Bacillariophyta  

N/A