Sample: MMETSP0415


Sample Name MMETSP0415 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Heterosigma akashiwo NB

Sample Accession CAM_SMPL_002551
Assembly  
Combined Assembly Heterosigma-akashiwo-NB
Taxon ID 536047

Phosphate 36.2  
Nitrate 882  
Silicate 106  
Axenic No  
Experimental salinity 15  
Environmental salinity 25.6  

Growth medium f/2-Si amended seawater  
Modifications to growth medium f/2 for all nutrients except eliminate Si  

NCBI SRA SRS618914  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Habitat marine habitat  
Habitat description Estuary  

Site name Atlantic_Ocean  
Latitude 41.65583  
Longitude -71.44778  
Site description Greenwich Cove, Narragansett Bay  
Country UNITED STATES  
Country US  
Depth 1  
Sample collection site Atlantic_Ocean  
Other collection site info Greenwich Cove, Narragansett Bay  

Project id 104  
Collection start time 2010-06-18 07:05:00.0  
Collection stop time 2010-06-18 07:05:00.0  
Clonal 1  
Collection date 18-JUN-10  
Date of experiment 07-SEP-11  
External sample id HA NB Low Salinity  
Investigation type EU  
Principle investigator Susanne Menden-Deuer  
Additional citations Fredrickson, K.A., S.L. Strom, R. Crim and K. Coyne. Inter-strain variability in physiology and genetics of Heterosigma akashiwo (Rahpidophyceae) from the west coast of North America. In press, Journal Phycology.Harvey E.L. and S. Menden-Deuer. 2011. Avo  
Additional citations Fredrickson, K.A., S.L. Strom, R. Crim and K. Coyne. Inter-strain variability in physiology and genetics of Heterosigma akashiwo (Rahpidophyceae) from the west coast of North America. In press, Journal Phycology.Harvey E.L. and S. Menden-Deuer. 2011. Avoi  
Primary citation Smayda et al 1993 Toxic Phytoplankton Blooms in the Sea  
Collection time 07:05 AM  
Other experimental metadata available not axenic  

GenBank BioSample 2740338  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP041/MMETSP0415.fastq.tar  

Day portion of day night cycle in hours 12  
Experimental temperature 15  
Night portion of day night cycle in hours 12  
Environmental temperature 21.2  

Library acc CAM_LIB_001317  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000369  
Combined assembly name Heterosigma-akashiwo-NB  
Pcr amp No  

Source mat id (MMETSP0415) Heterosigma akashiwo - Seawater  
Source mat id 3026  
Source mat id CAM_BM_002571  
Source mat id CAM_SMPL_002551  
Sample type eukaryotes  
Sample description Heterosigma akashiwo NB  
Sample name MMETSP0415  
Taxon id 536047  
Sample material Seawater  

Strain NB  
Genus Heterosigma  
Species akashiwo  
Family Chattonellaceae  
Order Chattonellales  
Superkingdom Eukaryota  
Class Raphidophyceae  
Phylum Ochrophyta