Sample: MMETSP0369


Sample Name MMETSP0369 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Scrippsiella hangoei-like SHHI-4

Sample Accession CAM_SMPL_002546
Assembly  
Combined Assembly Scrippsiella-hangoei_like-SHHI_4
Taxon ID 447022

Ph 7  
Phosphate 36  
Nitrate 883  
Silicate 100  
Axenic No  
Trace elements 20920  
Experimental salinity 30  
Environmental salinity 5  

Growth medium f/2 amended sea water without silica  

NCBI SRA SRS618912  

Habitat name freshwater habitat  
Envo term for habitat primary term Aquatic: freshwater  
Envo term for habitat secondary term Not Applicable  
Habitat freshwater habitat  
Habitat description under ice in saline lake  

Site name OTHER  
Latitude 68.46306  
Longitude 78.22333  
Site description Highway Lake  
Country ANTARCTICA  
Country AQ  
Sample collection site OTHER  
Other collection site info Highway Lake  
Elevation 8  

Project id 104  
Collection start time 2005-02-01 00:00:00.0  
Collection stop time 2005-02-01 00:00:00.0  
Filter min 20  
Clonal 1  
Collection date 01-FEB-05  
Date of experiment 15-JUN-11  
Investigation type EU  
Principle investigator Karin Rengefors  
Additional citations Logares, R., Daugbjerg, N., Boltovskoy, A., Kremp, A., Laybourn-Parry, J. & Rengefors, K. 2008. Recent evolutionary diversification of a protist lineage. Environmental Microbiology. 10: 1231-1243.  
Primary citation Rengefors, K., Laybourn-Parry, J., Logares, R., Mashall, W. A., & Hansen, G. 2008. Marine-derived dinoflagellates in Antarctic Saline Lakes: Community Composition and annual dynamics. Journal of Phycology 44 (3):341-349  
Filter fraction minimum 20  

GenBank BioSample 2740235  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP036/MMETSP0369.fastq.tar  

Day portion of day night cycle in hours 12  
Light 20  
Experimental temperature 3  
Night portion of day night cycle in hours 12  
Environmental temperature 2  

Library acc CAM_LIB_001312  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000364  
Combined assembly name Scrippsiella-hangoei_like-SHHI_4  
Pcr amp No  

Source mat id (MMETSP0369) Scrippsiella hangoei-like - lake water  
Source mat id 3021  
Source mat id CAM_BM_002566  
Source mat id CAM_SMPL_002546  
Sample type eukaryotes  
Sample description Scrippsiella hangoei-like SHHI-4  
Sample name MMETSP0369  
Taxon id 447022  
Sample material lake water  

Strain SHHI-4  
Genus Scrippsiella  
Species hangoei-like  
Family Peridiniaceae  
Order Peridiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta