Sample: MMETSP0398C


Sample Name MMETSP0398C 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Amphidinium carterae CCMP1314 (combined sample which includes MMETSP0398 and MMETSP0399)

Sample Accession CAM_SMPL_002537
Assembly  
Combined Assembly Amphidinium-carterae-CCMP1314
Taxon ID 2961

Ph 8.1  
Phosphate 36.2  
Nitrate 882  
Axenic No  
Trace elements 11.7  
Experimental salinity 28  

Growth medium f/2 amended seawater  

NCBI SRA SRS616847  

Habitat name marine habitat  
Habitat marine habitat  

Latitude 41.56  
Longitude -70.583  
Longitude 70.583  
Country US  
Sample collection site Atlantic_Ocean  
Other collection site info Falmouth Great Pond, Falmouth, Massachusetts  

Project id 104  
Clonal 1  
Date of experiment 15-MAY-11  
External sample id AmpcaSL1  
Investigation type EU  
Principle investigator Senjie Lin  
Primary citation Zhang, H., Bhattacharya, D. and Lin, S. 2007. A three-gene dinoflagellate phylogeny suggests monophyly of Procentrales and a basal positon for Amphidinium and Heterocapsa. J. Mol. Evol. 65: 463-474.  
Other experimental metadata available submitted is dinoflagellate spliced leader based cDNA prepared when culture was enriched in G1 phase.  

GenBank BioSample 2740468  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP039/MMETSP0398.fastq.tar  

Day portion of day night cycle in hours 14  
Light 200  
Experimental temperature 20  
Night portion of day night cycle in hours 10  

Library acc CAM_LIB_001303  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000355  
Combined assembly name Amphidinium-carterae-CCMP1314  
Pcr amp 1  

Source mat id (MMETSP0398) Amphidinium carterae  
Source mat id CAM_BM_002558  
Source mat id CAM_SMPL_002537  
Sample type eukaryotes  
Sample description Amphidinium carterae CCMP1314 (combined sample which includes MMETSP0398 and MMETSP0399)  
Sample name MMETSP0398C  
Taxon id 2961  

Strain CCMP1314  
Genus Amphidinium  
Species carterae  
Family Gymnodiniaceae  
Order Gymnodiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta  

N/A