Sample: MMETSP0382


Sample Name MMETSP0382 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Alexandrium tamarense CCMP1771

Sample Accession CAM_SMPL_002536
Assembly  
Combined Assembly Alexandrium-temarense-CCMP1771
Taxon ID 2926

Ph 6.8  
Phosphate 3.62  
Nitrate 88.2  
Axenic 1  
Trace elements 2450  
Experimental salinity 30  

Growth medium F/20 amended seawater  
Modifications to growth medium minus Si  

NCBI SRA SRS618881  

Habitat name marine habitat  
Envo term for habitat primary term Acquatic: marine  
Envo term for habitat secondary term Not Applicable  
Habitat marine habitat  
Habitat description Tamar Estuary, Plymouth, England, United Kingdom  

Site name English Channel  
Latitude 50.6  
Longitude 4.25  
Site description Tamar Estuary  
Country GB  
Country UNITED KINGDOM  
Sample collection site English Channel  
Other collection site info Tamar Estuary  

Project id 104  
Collection start time 1957-01-01 00:00:00.0  
Collection stop time 1957-01-01 00:00:00.0  
Clonal 1  
Collection date 01-JAN-57  
Date of experiment 17-MAY-11  
External sample id 1771 axenic early bloom  
Investigation type EU  
Principle investigator Mary Ann Moran  
Additional citations Moustafa, A., A. N. Evans, D. M. Kulis, J. D. Hackett, D. L. Erdner, D. M. Anderson, and D. Bhattacharya. 2010. Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial prese  
Additional citations Moustafa, A., A. N. Evans, D. M. Kulis, J. D. Hackett, D. L. Erdner, D. M. Anderson, and D. Bhattacharya. 2010. Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presen  
Primary citation Balech, E. (1995). The genus Alexandrium Halim (Dinoflagellata). pp. 1-151. Sherkin Island: Sherkin Island Marine Station.  
Other experimental metadata available chlorophyll, bacterial production, TOC, inorganic nutrients, particulate and dissolved DMSP, DMS  

GenBank BioSample 2739961  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP038/MMETSP0382.fastq.tar  

Day portion of day night cycle in hours 16  
Light 150  
Experimental temperature 18  
Night portion of day night cycle in hours 8  
Environmental temperature 16  

Library acc CAM_LIB_001302  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000354  
Combined assembly name Alexandrium-temarense-CCMP1771  
Pcr amp No  

Source mat id (MMETSP0382) Alexandrium tamarense - seawater  
Source mat id 3011  
Source mat id CAM_BM_002556  
Source mat id CAM_SMPL_002536  
Sample type eukaryotes  
Sample description Alexandrium tamarense CCMP1771  
Sample name MMETSP0382  
Taxon id 2926  
Sample material seawater  

Strain CCMP1771  
Genus Alexandrium  
Species tamarense  
Family Goniodomataceae  
Order Gonyaulacales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta