Sample: MMETSP0371


Sample Name MMETSP0371 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Peridinium aciculiferum PAER-2

Sample Accession CAM_SMPL_002535
Assembly  
Combined Assembly Peridinium-aciculiferum-PAER_2
Taxon ID 268820

Ph 7  
Phosphate 36  
Nitrate 883  
Silicate 100  
Axenic No  
Trace elements 20920  
Experimental salinity 3  

Longhurst province ARAB  

Growth medium f/2 amended sea water without silica  

NCBI SRA SRS616880  

Habitat name freshwater habitat  
Envo term for habitat primary term Aquatic: freshwater  
Envo term for habitat secondary term Not Applicable  
Habitat freshwater habitat  
Habitat description under ice in mesotrophic lake  

Site name OTHER  
Latitude 18.6  
Longitude 59.85  
Site description Lake Erken  
Country SE  
Country SWEDEN  
Sample collection site OTHER  
Other collection site info Lake Erken  
Elevation 15  

Project id 104  
Collection start time 2004-02-01 00:00:00.0  
Collection stop time 2004-02-01 00:00:00.0  
Filter min 20  
Clonal 1  
Collection date 01-FEB-04  
Date of experiment 15-JUN-11  
Investigation type EU  
Principle investigator Karin Rengefors  
Additional citations Rengefors, K. & Anderson, D. M. 1998. Environmental and endogenous regulation of cyst germination in two fresh-water dinoflagellates. Journal of Phycology 34 (4): 568–577.  
Primary citation 1. Logares, R., Rengefors, K. ,Kremp, A. , Shalchian-Tabrizi, K. , Boltovskoy, A., Tengs, T. , Shurtleff, A. , Klaveness. D. 2007. Phenotypically different microalgal morphospecies with identical ribosomal DNA: A case of rapid adaptive evolution? Microb  
Primary citation 1. Logares, R., Rengefors, K. ,Kremp, A. , Shalchian-Tabrizi, K. , Boltovskoy, A., Tengs, T. , Shurtleff, A. , Klaveness. D. 2007. Phenotypically different microalgal morphospecies with identical ribosomal DNA: A case of rapid adaptive evolution? Microbi  
Filter fraction minimum 20  

GenBank BioSample 2740222  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP037/MMETSP0371.fastq.tar  

Day portion of day night cycle in hours 12  
Light 20  
Experimental temperature 3  
Night portion of day night cycle in hours 12  
Environmental temperature 2  

Library acc CAM_LIB_001301  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000353  
Combined assembly name Peridinium-aciculiferum-PAER_2  
Pcr amp No  

Source mat id (MMETSP0371) Peridinium aciculiferum - freshwater  
Source mat id 3010  
Source mat id CAM_BM_002555  
Source mat id CAM_SMPL_002535  
Sample type eukaryotes  
Sample description Peridinium aciculiferum PAER-2  
Sample name MMETSP0371  
Taxon id 268820  
Sample material freshwater  

Strain PAER-2  
Genus Peridinium  
Species aciculiferum  
Family Peridiniaceae  
Order Peridiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta  

N/A