Sample: MMETSP0370


Sample Name MMETSP0370 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Peridinium aciculiferum PAER-2

Sample Accession CAM_SMPL_002534
Assembly  
Combined Assembly Peridinium-aciculiferum-PAER_2
Taxon ID 268820

Ph 7  
Phosphate 50  
Nitrate 1000  
Silicate 100  
Axenic No  
Trace elements 20920  

Longhurst province ARAB  

Growth medium MWC  
Modifications to growth medium Selenium added to a final concentration of 4.55 nmol/L  

NCBI SRA SRS616879  

Habitat name freshwater habitat  
Envo term for habitat primary term Aquatic: freshwater  
Envo term for habitat secondary term Not Applicable  
Habitat freshwater habitat  
Habitat description under ice in mesotrophic lake  

Site name OTHER  
Latitude 18.6  
Longitude 59.85  
Site description Lake Erken  
Country SE  
Country SWEDEN  
Sample collection site OTHER  
Other collection site info Lake Erken  
Elevation 15  

Project id 104  
Collection start time 2004-02-01 00:00:00.0  
Collection stop time 2004-02-01 00:00:00.0  
Filter min 20  
Clonal 1  
Collection date 01-FEB-04  
Date of experiment 15-JUN-11  
Investigation type EU  
Principle investigator Karin Rengefors  
Additional citations Rengefors, K. & Anderson, D. M. 1998. Environmental and endogenous regulation of cyst germination in two fresh-water dinoflagellates. Journal of Phycology 34 (4): 568–577.  
Primary citation Logares, R., Daugbjerg, N., Boltovskoy, A., Kremp, A., Laybourn-Parry, J. & Rengefors, K. 2008. Recent evolutionary diversification of a protist lineage. Environmental Microbiology. 10: 1231-1243.  
Filter fraction minimum 20  

GenBank BioSample 2740221  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP037/MMETSP0370.fastq.tar  

Day portion of day night cycle in hours 12  
Light 20  
Experimental temperature 3  
Night portion of day night cycle in hours 12  
Environmental temperature 2  

Library acc CAM_LIB_001300  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000352  
Combined assembly name Peridinium-aciculiferum-PAER_2  
Pcr amp No  

Source mat id (MMETSP0370) Peridinium aciculiferum - freshwater  
Source mat id 3009  
Source mat id CAM_BM_002554  
Source mat id CAM_SMPL_002534  
Sample type eukaryotes  
Sample description Peridinium aciculiferum PAER-2  
Sample name MMETSP0370  
Taxon id 268820  
Sample material freshwater  

Strain PAER-2  
Genus Peridinium  
Species aciculiferum  
Family Peridiniaceae  
Order Peridiniales  
Superkingdom Eukaryota  
Class Dinophyceae  
Phylum Dinophyta  

N/A