Sample: MMETSP0198


Sample Name MMETSP0198 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)
URL N/A
Description

Thraustochytrium sp. LLF1b

Sample Accession CAM_SMPL_002465
Assembly  
Combined Assembly Thraustochytrium-sp-LLF1b
Taxon ID 1112570

Chlorophyll 2.7  

Ph 7.4  
Phosphate 400  
Nitrate 7  
Silicate 8.3  
Ammonium 0.28  
Axenic 1  
Trace elements 668  
Experimental salinity 33.5  
Environmental salinity 33.4  

Growth medium B1 amended seawater  
Modifications to growth medium 5 g/L glucose  
Other environmental metadata available no other types of environmental metadata available  

NCBI SRA SRS618962  

Habitat name organism-associated habitat  
Envo term for habitat primary term Organism-Associated  
Envo term for habitat secondary term Not Applicable  
Habitat organism-associated habitat  
Habitat description green alga surface (littoral zone)  

Site name Pacific_Ocean  
Latitude 32.86667  
Longitude -117.25  
Longitude 117.25  
Site description La Jolla Shores Beach  
Country UNITED STATES  
Country US  
Sample collection site Pacific_Ocean  
Other collection site info La Jolla Shores Beach  

Project id 104  
Collection start time 2009-04-07 14:45:00.0  
Collection stop time 2009-04-07 14:45:00.0  
Clonal 1  
Collection date 07-APR-09  
Date of experiment 07-JUN-11  
External sample id LLF1b  
Investigation type EU  
Principle investigator Eric E. Allen  
Collection time 02:45 PM  
Other experimental metadata available no other types of experimental metadata available  

GenBank BioSample 2740310  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP019/MMETSP0198.fastq.tar  

Pressure 1  
Experimental temperature 25  
Environmental temperature 15.2  

Library acc CAM_LIB_001231  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000283  
Combined assembly name Thraustochytrium-sp-LLF1b  
Pcr amp No  

Source mat id (MMETSP0198) Thraustochytrium sp. - Ulva  
Source mat id 2940  
Source mat id CAM_BM_002485  
Source mat id CAM_SMPL_002465  
Sample type eukaryotes  
Sample description Thraustochytrium sp. LLF1b  
Sample name MMETSP0198  
Taxon id 1112570  
Sample material Ulva  

Strain LLF1b  
Genus Thraustochytrium  
Species sp.  
Family Thraustochytriaceae  
Order Labyrinthulomycetes  
Superkingdom Eukaryota  
Class Labyrinthulea  
Phylum Labyrinthista  

N/A